Macadamia integrifolia (macadamia nut): 122093837
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Entry
122093837 CDS
T07436
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03022
Basal transcription factors
ming03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122093837
09124 Replication and repair
03420 Nucleotide excision repair
122093837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122093837
03400 DNA repair and recombination proteins [BR:
ming03400
]
122093837
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122093837
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122093837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
Motif
Other DBs
NCBI-GeneID:
122093837
NCBI-ProteinID:
XP_042520298
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All DBs
Position
11:33314749..33337839
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AA seq
607 aa
AA seq
DB search
MAAGQVVMRAKYKTSVKDPGIPGVIKMTWDKFTFAPNDPRSSVKLAVGFKSIKGHKFSKE
GSKQALLNLTQDQGGGYIFEFDKFPDRDVCRDFVGKVLGKLQSIVPSGQDVKVASERSPA
TIQNEQLSPEEMERRMKLLRDDSELQKLHKQFVITGILTEAEFWATRKKLLGADGNKTSK
QQVGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAEKPAVHRAFLNFVPSKLSEKDF
WTKYCRAEYLHRTKNAVAAAAEAAEDEELAVFLKDDDILANEARQKIRRVDPTLDMEADE
GDDYMHILDHGILRDGIKETTDSEYELYKRSLSQDLNRHAAVVLEGRALEMELGDTRTVA
EALARSKQAELATKSCDENTNQGRLERVSRMTEIEDLQAPRTLPFAPLCIKDPREYFDAQ
QANALKALGDAVAGTRPSNCTLSTEEAYGSFRELISEMRAAGLSDPVVKPEVALKVLNGL
THHLSSTKYNLGKSAQESVLDRLPKSTKEELLLHWTSIQELLKHFWSSYPITTSYLYDKV
SRIKDAMSHIYPKLQEIKESVQSDYRHQVSLLVQPMLQALDAAFAHYDAELQKRSTTRSG
DRPNGFV
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggacaggtcgttatgcgcgctaagtataagacatctgttaaagaccccggc
atcccaggagtgattaagatgacctgggataaatttacatttgctccaaatgatcctagg
tcatccgtgaagcttgctgtggggtttaaatccattaaaggtcacaagttcagcaaggag
ggatcgaaacaggcactactgaatcttacacaagatcagggtggaggttacattttcgag
tttgacaagttccctgatcgtgatgtttgccgagatttcgtgggaaaagtccttgggaaa
cttcagtctattgttccatctggacaggatgttaaagtggcatcagaaagatctcctgct
acaattcaaaatgaacaacttagtccagaagaaatggagcgccgaatgaagttattgcga
gatgatagtgagctgcagaaattgcacaagcaatttgtcatcaccggcatcttgacagaa
gctgaattctgggcgacaaggaagaagttgctaggtgctgatggcaataaaacatcaaaa
caacaagtggggttcaaaagtgcaatgcttgcagatgttaggcccttgactgatggtcgg
accaataaggtcacatttagcctgactccggagatcattcaccagatatttgctgaaaaa
ccagctgtccaccgagcatttctgaattttgttcccagcaagttgtcagaaaaggatttc
tggacaaaatattgtagagcagaatatcttcataggacaaaaaatgctgttgcagctgcg
gcggaggcggctgaagatgaggagcttgctgttttcttaaaggatgatgacatattggcc
aatgaagctcggcagaagatcagacgggttgatccgactcttgacatggaagctgatgaa
ggggatgattacatgcatattttggaccatggaattctgcgtgatggtattaaggagact
actgattcagagtatgagctatacaaaaggagtctctctcaggaccttaaccggcatgca
gcagttgttcttgaaggaagagctctagaaatggagttgggagacacaaggactgtagct
gaagcacttgctaggtccaaacaggctgagctagccaccaaatcctgtgatgagaataca
aaccaggggcggttggaaagagtatctcggatgactgagattgaggatcttcaggcacct
cgcacccttccatttgcacctctttgtataaaggaccctcgagaatactttgatgcccaa
caagctaatgcgcttaaagctttaggagacgcagtagctggaacaaggccttcaaattgt
accttgagcacagaggaggcatatggttcttttagggagctcatttctgagatgagagca
gcaggattgagtgatcctgtagttaaacccgaagttgcacttaaggttctgaatggattg
actcatcatctctcaagcaccaagtataatcttgggaagagcgctcaggagagtgtcctg
gataggctgccgaaaagtaccaaagaagaacttctgcttcattggacatctattcaggaa
ttgcttaagcatttctggtcatcatatccaattacaacttcatacctttatgataaggtt
agcagaatcaaggatgcaatgtcacatatctatcccaagcttcaggagatcaaagaatcc
gtgcagtcggattaccgacatcaagtatctcttcttgttcaacccatgctccaggctcta
gatgctgcctttgcacactatgacgcagagctgcagaagagatccaccactaggagtggg
gatagaccaaatggatttgtctaa
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