Mixta intestinalis: C7M51_00929
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Entry
C7M51_00929 CDS
T06391
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mint
Mixta intestinalis
Pathway
mint03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mint00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C7M51_00929 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mint03400
]
C7M51_00929 (mfd)
Enzymes [BR:
mint01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7M51_00929 (mfd)
DNA repair and recombination proteins [BR:
mint03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C7M51_00929 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
DUF488
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QHM70651
UniProt:
A0A6P1PWY8
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All DBs
Position
complement(1001076..1004525)
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AA seq
1149 aa
AA seq
DB search
MPEQIRYALPAAAADQRQLGQLTGAACAVECAEMAERHPGLVMLIAPDMQTSLRLQDEIR
QFTRQPVISLADWETLPFDSFSPHQDIISSRLSTLYRLPTLERGVLILPVTTLMQRYCPH
EFLHSHALVMHKGQQLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RIDFFDDEIDSLRLFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWREHFDVRRE
PEHIYQQVSKGTLPAGIEYWQPLFFAQPLVPLFSYLPRGTLVVSTGDLEASAERFWQDIM
ARFENRRVDPMRPLLPPETLWLRTDGLFAELKKWPRVRMSGETLPDKAANSNLDYQPLPE
LAVEPQAKAPLDNLRRFLESFHGAVIFSVESEGRREALQELLARIKLQPKAIQCLDQASA
AGHYLMIGASERGFIDNLRQRALICEGDLLGERVSRRRQDTRRTINPDVLIRNLAELHPG
QPVVHLEHGVGRYIGLTTLEAGGIKAEYLMLAYANDAKLYVPVSSLHLISRYAGGADENA
PLHKLGSDTWSRARQKAAEKVRDVAAELLDIYAQRAAKSGYAFKYDREQYQLFCDSFPFE
TTPDQAQAINAVLNDMRQPLAMDRLVCGDVGFGKTEVAMRAAFMAVENNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQVLEQASDGKIDILIGTHKLLMSDLKW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAHRLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPPPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMESIGFSLYMELLENAVDALKEGREPSLEDLTRHQTEIELRMPALLPDDFIPDV
NTRLSFYKRIASADDRRELDDLKVELIDRFGNLPDAARNLLDIAALRLSAQQLGVRRIEA
SEKGGFIEFAEKNQVDPGWLISLLQQDPKQWRLDGPTRLKFTRDLEERKLRMDWIRELME
QMQAHMLAS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacagattcgctatgccctgcccgccgcggcagccgatcaacgccagctgggc
cagcttaccggtgccgcctgtgccgttgaatgcgcggaaatggcggagcgtcaccccgga
ctggtgatgctgattgcgccggatatgcaaacgtcgctgcggctgcaggatgaaatcaga
cagtttactcgccagccggttatcagcctggcagactgggaaacgctaccgttcgacagc
ttctctccccatcaggacattatctcttcgcgcctttccacgctctatcgcctgccgacg
ctggagcgcggcgtgctgatcctgccggtgaccaccctgatgcagcgctactgcccgcac
gaatttttgcatagtcatgcgttggtgatgcataaaggccagcagctgtcacgcgatcgc
ctgcgcgatcagctggaacaggcaggctatcgtcacgtcgatcaggtgatggagcatggc
gaatacgccacgcgcggtgcgctgttggacctgtttccgatgggcagcgaacagccctac
cgtatcgactttttcgatgatgagatcgacagcctgcggctgtttgacgtcgacagtcag
cgtacgctggaagaggttgaggcgatcaacctgctgcccgcgcacgaattcccgaccgat
aaagcggcaattgagctgtttcgcagccagtggcgcgagcattttgatgtgcgccgcgag
ccggagcatatctatcagcaggtaagtaaaggtacgctgcccgcaggcattgaatactgg
cagccgctgtttttcgcgcagccgctggtgccgctgttcagctatttgccacgcggcacg
ctggtggtcagcaccggcgatctggaagcgagcgccgagcgtttctggcaggatattatg
gcgcgcttcgagaatcgccgcgtcgatccgatgcgcccattgctgccgccggaaacgctc
tggctgcgtaccgacgggctttttgccgagctgaaaaagtggccgcgggtgcgcatgagc
ggcgaaacgctgccggataaagcggccaacagcaacctcgattatcagccgttgccggag
ctggcggtggaaccgcaggcaaaagcgccgctggataatttgcgccgctttctggaaagt
tttcacggtgccgtgatcttttccgtcgagagcgaaggccgccgcgaagcgttacaggag
ctgctggcgcgcatcaagctgcaaccgaaagcgattcagtgcctcgatcaggccagcgca
gcgggccattatctgatgattggtgccagcgagcgcggttttattgataatctgcgccag
cgcgcgctgatttgcgaaggcgatctgttgggcgaacgcgtcagccgtcgccgccaggat
acgcgtcgcactatcaacccggatgtgctgatccgcaacctggcggaactgcatcccggt
cagccggtggtgcaccttgagcatggcgtgggccgctatatcggcctgaccacgctcgaa
gcgggcggcatcaaagcggaatacctgatgctggcctatgccaacgatgccaaactctat
gttccggtctcttcgctgcatctgattagccgctacgctggcggcgcggatgagaacgcc
ccgctgcacaagctgggcagcgatacctggtcacgtgcgcgtcagaaagcggcggaaaaa
gtacgtgacgtggcggcggaactgctggatatctatgcgcagcgcgctgctaaatcgggc
tacgcctttaaatacgatcgtgaacagtatcagctgttttgtgacagcttcccgtttgaa
accacgccggatcaggcgcaggcgattaatgcggtgctgaacgatatgcgtcagccgctg
gcgatggatcggctggtgtgcggcgatgttggctttggtaaaaccgaagtggcgatgcgc
gctgcttttatggcggtagaaaacaataagcaggtagcggtactggtgccgaccacgctg
ctggcgcagcaacattacgataacttccgcgaccgcttcgccaactggccggtgcgcatt
gagatgctttcccgctttcgtagcgccaaagagcaggcgcaggtgctggaacaggcaagc
gatggcaagattgatatcctgatcggcacccataagttgttgatgagcgatctgaaatgg
cgcgatctcggactgctgattgtcgatgaagaacatcgctttggcgtacgtcataaagag
cgcatcaaggcgatgcgcgccgatgtcgatattctgacgctgaccgccacgccgattccg
cgaacgttaaatatggcgatgagcggtatgcgcgatctgtcgattatcgctaccccaccc
gcccgtcgcctggcggtgaaaacctttgtacgcgagtatgacagcctggtggtgcgcgag
gcgatcctgcgtgaaattttgcgcggcggtcaggtttattatctctataacgacgtagag
aatatcgagaaagcggcccatcgtctggcggagctggtgccggaagcgcgtatcgctatc
ggtcacgggcagatgcgcgagcgcgatctggaacgggtgatgaatgatttccatcaccag
cgttttaacgtgctggtctgtaccaccattatcgagaccggtatcgatattcctaccgcc
aataccattatcatcgagcgcgccgatcactttggcctggcgcagctgcatcagctacgc
gggcgcgtcgggcgttcacatcatcaggcctacgcctggctgttaacgccgccgccgaaa
gcgatgaccaccgatgcgcacaagcgtctggaggcgatcgcgtcgctggaagatctgggc
gcgggttttgccctggcaacgcacgatctggaaattcgcggcgcgggtgaactgctgggc
gaagatcaaagcggccagatggagagcattggcttctcgctctatatggagctgctggag
aacgcggttgatgcattgaaagaaggacgtgaaccatctctggaagacttgacccgccac
cagacggagatcgagctgcgaatgcctgccctgctgccggacgactttatcccggacgtc
aatacccgcctctctttctataagcgcattgccagcgctgacgatcgtcgcgagctggat
gacctgaaggtagaactgatcgatcgcttcggcaatctgccggatgcggcgcgtaacctg
ctggatatcgccgcgctgcgcctgtccgcacagcagcttggcgtgcgccggattgaggcc
agcgaaaaaggtggctttattgagttcgcagagaaaaaccaggttgatccaggctggctg
attagcctgttgcagcaggacccgaaacagtggcggcttgatggcccaacgcgtctgaag
tttactcgcgacctggaagagcgcaagctgcgcatggactggatacgtgagctgatggag
cagatgcaggcgcacatgctggcaagctga
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