Mixta intestinalis: C7M51_02882
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Entry
C7M51_02882 CDS
T06391
Symbol
rnr_1
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mint
Mixta intestinalis
Pathway
mint03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mint00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7M51_02882 (rnr_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mint03019
]
C7M51_02882 (rnr_1)
03016 Transfer RNA biogenesis [BR:
mint03016
]
C7M51_02882 (rnr_1)
Enzymes [BR:
mint01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C7M51_02882 (rnr_1)
Messenger RNA biogenesis [BR:
mint03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7M51_02882 (rnr_1)
Transfer RNA biogenesis [BR:
mint03016
]
Prokaryotic type
tRNA degradation factors
C7M51_02882 (rnr_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
MetOD2
Motif
Other DBs
NCBI-ProteinID:
QHM72569
UniProt:
A0A6P1Q388
LinkDB
All DBs
Position
complement(3114460..3116475)
Genome browser
AA seq
671 aa
AA seq
DB search
MVRVLEPRNSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPEEIMNARMGFVVVVELVQRP
TRRTKAIGKIIEVLGDNMGTGLAVDMALRTHEIPHDWPAEVEAQVATLREEVPEEAKQGR
VDLRQLPLMTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPGTPLDNEAHNRG
TSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSASGKLTGYKHYEAVMNSHAR
LTYTKVWAILQGNPELREQYAPLVKHIEELHRMYQVLEKAREQRGGISFETEEAKFIFNA
ERRIERVERTVRNDAHKLIEECMILANIASARFVEKHQEPALFRDHDRPSDDSIKSFRSV
LAELGLSLPGGSKPQPLDYAELLETIADRPDHEMLQTMLLRSMKQAVYDPENRGHFGLAL
SSYAHFTSPIRRYPDLLLHRAIKYLIAQQQGKLEGNSTPTGGFHYDMQQMLQLGLHCSMT
ERRADEATRDVADWLKCDFMQDQVGNTFTGVIASVTGFGFFVRLNDLFIDGLVHVSTLDN
DYYRFDAVGQRLIGESGGRTYRLGDTVEVRVEAVHMDERKIDFALISSQRRPRGEGKTER
EKAKKGGAGAHNKRRREMRKNVNFEPNEAFRGEGKKSAKVKGEKKAKKPSEKTRKIAAAT
KAKRAAKKKEA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
gtggtgcgcgtgctggaaccgcgcaacagccagattgtgggacgctacttcactgaagct
ggcgttggctttgtggtgccggacgacagccgcctgagtttcgatatcctgattccgccg
gaagagatcatgaatgctcgcatgggcttcgtggtagtggtggaactggtacagcgcccg
acgcgccgcactaaagcgatcggtaaaattattgaggtgctgggtgataacatgggcacc
ggcctggcggtcgatatggcgttgcgcacccatgaaattccgcacgactggcccgccgaa
gtagaagcacaggtagctacgctgcgtgaagaagtaccggaagaggcgaagcaggggcgc
gtcgatctgcgtcagctgccgctgatgaccattgatggcgaagacgcgcgtgatttcgat
gacgctgtttactgtgagaaaaagcgcggtggtggctggcgtctgtgggtagctatcgct
gacgtcagttattatgtgcgtcccggtacgccgctggataatgaagcgcataatcgcggc
acctcggtttatttcccgtcgcaggtcgtgccgatgctaccggaagtgctctctaacggg
ctctgctcgcttaatccgcaggtagatcgcctgtgtatggtatgcgaaatgaccgtttct
gccagcggtaaactgaccggctacaagcactatgaagcggtgatgaattcccatgcgcga
ctgacctacaccaaagtgtgggcgatcctgcagggcaatcctgagctgcgcgaacagtat
gcgccgctggtgaagcatatcgaagagctgcaccgcatgtatcaggtgctggagaaggcg
cgtgagcagcgcggcggcatttcgtttgaaacggaagaggcgaagttcatctttaacgcc
gagcgccgcattgagcgtgtagagcgtaccgtacgtaacgatgcgcataagctaattgaa
gagtgcatgatcctggcgaatattgcctcggcgcgctttgttgagaagcatcaggagcca
gcactgttccgcgatcacgatcgccccagcgatgacagcatcaaaagtttccgttccgtg
ctggcggaacttggcctctctctgccgggtggcagtaagccgcagccgctggattacgcc
gagctgctggaaactatcgccgatcgccccgatcatgaaatgctgcaaactatgctgcta
cgttcgatgaaacaggcggtttacgatccggaaaaccgtgggcactttggtctggcgctt
tcttcttacgcgcactttacttcgccaattcgccgttatcctgatctgctgctgcatcgt
gccatcaaatatttgatcgcccagcagcagggcaagctggaaggtaacagcacgccgacc
ggcggcttccactacgatatgcagcagatgttgcagctgggcctccattgttcaatgacc
gaacgccgtgccgatgaagccacacgtgacgtggcggactggctgaagtgtgacttcatg
caggatcaggtaggcaacacctttaccggggtgatcgccagcgtcaccggcttcggtttc
tttgtgcgcctgaacgatctctttatcgacggcctggtacatgtctccacgctggataat
gattactaccgctttgatgccgtaggccagcgcctgattggtgaatcgggtggacgcacc
tatcgcctgggcgataccgttgaagttcgggtggaagcggtgcatatggatgagcgtaag
atcgatttcgcgctgatttccagccagcgtcgtccgcgtggtgaaggcaaaacggagcgc
gagaaggcgaagaaaggcggtgccggagcgcataacaagcgccgtcgcgagatgcgtaaa
aacgttaatttcgagccaaatgaagctttccgtggcgaaggcaaaaagtcagcaaaagtg
aaaggcgagaaaaaagcgaaaaaaccttcggaaaaaacccgtaaaatcgccgccgcaacc
aaagcgaagcgcgcagcgaagaaaaaagaggcgtag
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