Microbacterium invictum: T9R20_06900
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Entry
T9R20_06900 CDS
T09642
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
minv
Microbacterium invictum
Brite
KEGG Orthology (KO) [BR:
minv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minv03019
]
T9R20_06900 (hrpA)
Enzymes [BR:
minv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
T9R20_06900 (hrpA)
Messenger RNA biogenesis [BR:
minv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
T9R20_06900 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
WHD_HA2
nSTAND_NTPase5
ResIII
T2SSE
nSTAND3
NACHT
AAA_30
SLFN-g3_helicase
FtsK_SpoIIIE
SRP54
Motif
Other DBs
NCBI-ProteinID:
WQB72012
UniProt:
A0ABZ0VEJ0
LinkDB
All DBs
Position
complement(1429367..1433287)
Genome browser
AA seq
1306 aa
AA seq
DB search
MPRDPLTTAPAAVRWRAMPTTAPVIAYPPELPVSAARDEIAAAIRDHQVVIVAGATGSGK
TTQLPKICLELGRERIAHTQPRRIAARSIAERIAEELEVPLGGTVGYKVRFTDQVSDDTR
VALMTDGILLNEIHRDRLLRRYDTIIVDEAHERSLNVDFLIGYLTRILPKRPDLKVIITS
ATIDPQSFAAHFADRSGTPAPIIEVSGRTYPVEIRYRPATEHEDDDIDGLLSALRELDRE
PAGDVLVFLPGEAEIRDAMDAVRGMYARDVAPTEVLPLYGRLTSAEQHRVFERSSTAGIR
RRIILATNVAETSLTVPGIRYVIDTGTARISRYSNRSKIQRLPIEPVSQASAQQRAGRAG
RTAPGVAIRLYSEDDFLSRPEFTEPEILRTSLAAVLLQMLSLGFGDVASFPFLTRPDSRG
VKAALDLLTELGAVHAGERGPRLTDIGRRIARLPIDPRFARMLIEAERTKVLAPVLAIVA
GLSIQDVRERPEERREEADRLHARFTDPTSDFLTLLNLWKHLREQQAELGSSAFRRLCRS
EHLNYVRVREWFDVHRQLSALLGARRADAADTADPDDIHRAILSGLLSQIGILDERPSSR
PDERGRDRRRGDQGRAEYRGARGTRFAIFPGSGLRKRRPAAVMAAELVETSRLFARTVAE
IDPAWAEALAGDLAHRSVSEPHWSKSAGAASAYEKITLFGVEIIPRRRVQLARFDRPLAR
EMFVRHALVEGDVDLSYLDKRLSAFERRNADLRRRLEKLEERERRRDILAGDEAVYAFYD
ARLPADVFDVRSFERWWKDASTRTPRLLDMSEADLLDDAARADERDFPTRWRQGDQVLSL
AYRFEPGAPDDGVTVVIPLPLLAQLRPDGFDWQVPGLRPELIAALIRSLPKAIRRHVVPA
ADWAARLGDELHGQGPEATDGRPDTTLTVALARLIQRAASQPVGEEDFDLERIPGHLRMS
FRAVDDRGRALGSDRDLTALQDRLRGRARSSVARTLERPTAKVAAAGASATAATGVTVAE
RTGITTWDLGDLPALVDTRVAGGVVRGYPALLDERESVALRIESTPDAAAAALRAGVRRL
LLLAVPSPATYVLEHLTAPEKLALAASPYPSARALIEDARSTLADAVLDRVAGSEPVRSA
AVFARAREEFSRAGVDELFALVSLAAKILTAGREVERAVRAVTSMALLGALGDIKAQLAG
LIFPGFLSRTGAARLAHLPRYLRAAADRASTLADNPGRDRQRLTEFERAAAAYAEAGGVI
PLPPDAPHALVRARWMLEEYRVSLFAQPLGTAEPVSLQRIQKALRE
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atcccgcgcgacccgctaacgacggcccccgcggccgtacgatggagggctatgcccacg
accgccccggtgatcgcctacccgcccgagctgcccgtcagcgcggcccgggacgagatc
gccgccgccatccgcgaccaccaggtggtgatcgtcgcgggggcgaccggttcgggcaag
accacgcagctgccgaagatctgcctcgagctcgggcgggagcgcatcgcgcacacccag
ccccgccgcatcgccgcccgctcgatcgcggagcggatcgccgaggagctcgaggtgcct
ctcggcggcacggtcggatacaaggtgcgcttcaccgaccaggtctccgacgacacgcgg
gtcgccctcatgaccgacgggatcctcctcaacgagatccaccgcgaccggctgctgcgc
cgctacgacacgatcatcgtcgacgaggcgcacgagcggtcgctgaacgtcgacttcctg
atcggctacctcacccgcatcctgccgaagcgtcccgacctcaaagtcatcatcacctcc
gccacgatcgatccgcagagtttcgcggcgcacttcgccgaccgctcgggcacccccgcg
ccgatcatcgaggtctccggacgcacctaccccgtcgagatccgctaccgtcccgccacg
gagcacgaggacgacgacatcgacgggctgctgtcggccctgcgagagctcgatcgcgaa
ccggcaggcgatgtgctggtgttcctccccggcgaggccgagatccgcgacgccatggat
gccgtccgcggcatgtacgccagggacgtcgcacccaccgaggtcctccccctctacggc
cggctcacctcggcggagcagcaccgggtgttcgaacgctcgagcaccgcggggatccgt
cgccgcatcatcctcgcgaccaacgtcgccgagacgagcctcacggtgcccggcatccgg
tacgtcatcgacaccggcacggcccgcatctcgcggtacagcaaccgcagcaagatccag
cggctcccgatcgagccggtctcccaggcctcggcccagcagcgcgcgggccgcgccggg
cggaccgcgccgggcgtcgcgatccggctgtacagcgaggacgacttcctctctcgaccc
gaattcaccgagcccgagatcctgcggacgagcctcgccgccgtgctcctgcagatgctc
agcctcggcttcggagacgtggcatcgttcccgttcctcacgcgcccggattctcgcggc
gtgaaagcggcgctcgatctcctcaccgagctcggcgccgtgcacgccggggagcgcggc
ccgcggctgaccgacatcggacgccgcatcgcgcggctgcccatcgacccgcgcttcgcg
cgcatgctgatcgaggccgagcggacgaaggtgctcgctccggtgctcgcgatcgtcgcg
ggcctgtcgatccaggacgtccgcgagcgaccggaggagcgtcgcgaggaggccgaccgc
ctccacgcccgcttcaccgatccgaccagcgacttcctcacgctgctgaatctgtggaag
cacctgcgcgagcagcaggccgagctcggctcgagcgcgttccggcggctgtgccgcagc
gagcacctgaactatgtgcgcgttcgggaatggttcgacgtgcaccggcagctcagtgcg
ctgctgggtgcgagaagagcggatgccgcggacacggccgatcccgatgacatccaccgg
gcgatcctgtccggcctcctctcgcagatcggcatcctcgacgagcgcccgagctcccga
cccgatgagcgcggtcgtgatcgccggcgcggcgaccagggacgcgccgagtaccgcggc
gcgcgaggaacacgcttcgcgattttccccggctcggggctgcgcaagcgccgccccgcg
gcggtgatggccgccgaactcgtggagacctcgcgcctgttcgcccgcaccgtcgccgag
atcgaccccgcctgggcggaggccctcgccggcgatctcgcgcaccgcagcgtcagcgaa
ccccactggtccaagagcgcgggcgcggcgtcggcgtacgagaagatcacgctgttcggg
gtcgagatcatcccgcggcgccgggtgcagctggcccgcttcgaccggccgctggcccgg
gagatgttcgtgcgccacgcgctcgtcgagggcgacgtggatctgtcgtacctcgacaag
cggctcagcgcgttcgagcgccgcaacgccgacctgcgccgacggctggagaagctcgag
gagcgcgaacgccgccgagacatcctcgccggcgacgaggcggtctacgcgttctacgat
gcgcgcctgccggccgacgtcttcgacgtgcgctcgttcgagcggtggtggaaggacgcc
tcgacccgcaccccgcgcctgctcgacatgagcgaggccgatctcctcgacgacgccgcc
cgcgcggacgagcgcgacttccccacccggtggcggcagggcgatcaggtgctctcgctc
gcctaccggttcgagcccggcgctcccgacgacggcgtcaccgtcgtcatcccgctgccg
cttctcgcacagctgcgccccgacggcttcgactggcaggtgccggggcttcgtcccgag
ctcatcgccgcgctcatccgctccctccccaaggccatccgccgtcacgtggtccccgcc
gccgactgggcggcccggctcggcgatgagctccacggtcagggcccagaggccaccgac
ggtcgtcccgacacgacgctcaccgtcgccctcgcgcggctgatccaacgcgccgccagc
cagccggtgggcgaggaggacttcgatctggagcggatccccgggcacctccgcatgtcg
ttccgcgccgtggacgatcggggccgggccctcggcagcgatcgcgacctcaccgcactc
caggaccgcctccgcggccgcgcacgttcctcggtcgcccgcaccctcgagcgcccgacc
gcgaaagtcgccgcggccggggcgtcggcgactgcggcgacgggagtcacggtcgccgag
cgcaccgggatcacgacctgggatctcggcgacctcccggccctcgtcgacacccgggtc
gcgggcggcgtcgtgcgaggctaccccgcccttctcgacgagcgggagagcgtggccctg
cggatcgagtcgactccggatgccgcggccgcggccctgcgcgcaggcgtgcgacggctg
ctgctgctcgcggtgccctccccggcgacctacgtcctcgagcacctcaccgccccggag
aagctcgcgctcgccgcgagcccctacccgtcggcccgggcgctcatcgaggacgcgcgc
tcgacgctcgccgacgcggtcctcgaccgtgtcgcaggctcggagcccgtgcggtcggcc
gcggtgttcgcgcgggcccgcgaggagttctctcgcgcaggcgtcgacgagctgttcgcc
ctggtgtccctggcggcgaagatcctcacggccgggcgcgaggtcgagcgggctgtccgc
gccgtgacctcgatggcgctcctcggcgctctcggcgacatcaaggcgcagctggcgggc
ctgatcttccccggcttcctctcccgcaccggcgccgcccggctcgcccacctcccgcgc
tacctgcgtgccgccgccgaccgggcgtccaccctcgccgacaaccccggccgcgaccgg
cagcgactgaccgagttcgaacgcgccgcggcggcctacgccgaggcgggcggggtcatc
ccgctcccgccggacgcgccgcatgcgcttgtgcgcgcccggtggatgctggaggagtac
cgggtcagcctgttcgcccagccgctcggcacggccgagcccgtgtcgctgcagcgcatc
cagaaggcgctccgggaatag
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