Microbacterium invictum: T9R20_15125
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Entry
T9R20_15125 CDS
T09642
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
minv
Microbacterium invictum
Pathway
minv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
minv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T9R20_15125 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minv03021
]
T9R20_15125 (rpoC)
03400 DNA repair and recombination proteins [BR:
minv03400
]
T9R20_15125 (rpoC)
Enzymes [BR:
minv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T9R20_15125 (rpoC)
Transcription machinery [BR:
minv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T9R20_15125 (rpoC)
DNA repair and recombination proteins [BR:
minv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T9R20_15125 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
Motif
Other DBs
NCBI-ProteinID:
WQB70010
LinkDB
All DBs
Position
complement(3139390..3143259)
Genome browser
AA seq
1289 aa
AA seq
DB search
MLDATTFDELRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEEARHRDLATQENNIRLEIKTLGDRRDAKIAARLSKLEEE
LAALEAEGAKADQKKKVKDAAEKDMAQARKQADDAIAKLERVWEDFRTLEVGSLKGEDEI
FQELQDRFGQYFEAHMGAESIKRRLEAFDLAAEAESLHLQIAEGKGQRKIRAIKRLKVVN
SFLQTGMSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKEGAAGEGR
VFGSVSEAILAKDEGTLDLQAKVRIRVPGLTFLEGEAPEGYERHGLVDTSLGQAIFNDAL
PKGYPFVREQADKGKLSQIVNKLAEEYPKVEVAATLDRIKDAGFYWATRSGVTVALSDIL
TPPNKAEIVGRYEKQAAKVQSQFEKGLTTDAERRQELIKIWTEATDEVQKAMRDNFPADN
TINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTSKGLELPIAAPGFDGTLVKDANVE
NSVFARTLAADVVSASGEVLAAAGSDVGDIVINALVEAGVETIKVRSVLTCDSAVGVCAK
CYGRSLATGKIVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEADGRITIEETDKSKKIILTPDSGDEPVVYPVLKRATLLVEDGQHVTV
GQPLQVGTLDPKEVMRVMGAREVQKYLVNGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTTLLPGELVDLKRYQGINREAVGSGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVVVEATEEAKSERYPNRI
FASDGAYSDADLSYVDFDSFSTDDFGTYN
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgcaacaacgtttgacgagcttcgcatcggcctcgccacggccgacgacatc
cgccgctggtcgttcggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttcggagagcagatcttcgggcccagccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtccgccgcgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctggacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtgatctctgtcgac
gaggaggcgcgtcaccgcgacctcgccacccaggagaacaacatccgcctggagatcaag
acgctcggcgaccgccgtgacgccaagatcgccgcgcgcctgtccaagctggaggaggag
ctcgccgccctcgaggcggagggcgccaaggccgaccagaagaagaaggtcaaggacgcc
gccgagaaggacatggcgcaggcccgcaagcaggccgacgacgccatcgccaagctcgag
cgcgtctgggaggacttccgcaccctcgaggtcggctcgctcaagggcgaggacgagatc
ttccaggagctgcaggaccgcttcggtcagtacttcgaggcccacatgggcgccgagtcg
atcaagcgccgcctggaggcgttcgacctggccgccgaggcggagagcctgcacctgcag
atcgccgagggcaagggccagcgcaagatccgcgcgatcaagcgcctgaaggtcgtcaac
tcgttcctgcagacgggcatgagccccgccgcgatggtcctggacgtcgtccccgtcatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgcgacatccgatctg
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgtcttcgtcgcctgatcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgtcgcggtcgccccgtcaccggtaccggcaaccgtgcgctgaag
tcgctctcggacatgctgaagggcaagcagggccggttccgccagaacctgctcggaaag
cgcgtggactactcgggccgttcggtcatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtcttcccaagcagatggccctggagctcttcaagccgttcgtcatcaagcgcctc
atcgacctcggtcactcgcagaacatcaaggccgccaagcgcgccgtcgagcgcacgcgt
cccgaggtgtgggacgtgctcgaggagatcatccgcgagcgtccggtgctgctgaaccgc
gcgcccaccctgcaccgcctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtgtgtgcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtcggtcgaggcccaggccgaggcccgcatcctgatgctc
gcctcgaacaacatcctgaagccctcggacggccgtccggtgaccctgccctcgcaggac
atgatcatcggcctgcaccacctcaccacggtgaaggagggcgctgcgggcgagggtcgc
gtgttcggctcggtctcggaggcgatcctggccaaggacgagggcaccctcgacctgcag
gccaaggtccgcatccgcgttccggggctcaccttcctcgagggcgaggcccccgaggga
tacgagcgccacggcctcgtcgacacctcgctcggccaggcgatcttcaacgacgcgctg
cccaagggctacccgttcgtgcgcgaacaggccgacaagggcaagctgtcgcagatcgtc
aacaagctcgccgaggagtaccccaaggtggaggtcgccgcgacgctcgaccgcatcaag
gacgccggcttctactgggccacgcgctcgggtgtgacggtcgccctcagcgacatcctg
accccgcccaacaaggcggagatcgtgggtcgctacgagaagcaggccgcgaaggtccag
tcgcagttcgagaagggtctcaccaccgacgccgagcgtcgtcaggagctcatcaagatc
tggaccgaggcgaccgacgaggtccagaaggcgatgcgcgacaacttcccggccgacaac
accatcaaccggatggtctcgtcgggtgcgcgcggtaactggctgcagatccggaacatc
gccggtatgcgaggcctggtgaacaaccccaagggtgagatcatcccgcgcccgatcatc
tcctcgtaccgcgagggcctgtcggtggcggagtacttcatcgccacgcacggtgcccgt
aagggtctggccgacacggccctccgtaccgccgactccgggtacctcacccggcgtctc
gtggacgtctcgcaggacgtcatcatccgcgaggaggactgcggcacgtccaagggcctc
gagctgccgatcgccgctcccggcttcgacggcactctggtcaaggacgccaacgtcgag
aactcggtgttcgcccgcaccctggcggccgatgtcgtcagcgcctccggcgaggtgctc
gccgcggcgggctccgatgtcggcgacatcgtcatcaacgcgctcgtcgaggcgggcgtg
gagacgatcaaggtccgctcggtgctcacctgcgactccgccgtcggtgtctgcgcgaag
tgctacggccgatcgctcgcgaccggcaagatcgtcgacatcggcgaggccgtgggcatc
atcgcggcccagtcgatcggtgagcccggaacccagctgacgatgcgtaccttccacacc
ggtgggtcggcgtcggcggacgacatcacccagggtctgccccgcgtgcaggagctcttc
gaggcccgtacccccaagggtgcgtccccgatcgccgaggccgacggccgcatcacgatc
gaggagaccgacaagagcaagaagatcatcctcacgcccgactcgggtgacgagccggtg
gtctacccggtgctcaagcgcgcgactctcctcgtcgaggacggccagcacgtcacggtc
ggtcagcccctgcaggtcggcacgctcgaccccaaggaggtcatgcgcgtcatgggtgcc
cgcgaggtgcagaagtacctcgtgaacggcgtccagggcgtctaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcggaaggtcaccgtg
gtcgaccacggcgacaccacgctgcttccgggtgagctcgtcgacctcaagcgctaccag
ggcatcaaccgcgaggccgtcggctcgggcaagcgcccggcgtcgggtcgtccggagctc
atgggtatcaccaaggcgtcgctcgcgaccgagtcgtggctgtcggccgcgtcgttccag
gagaccacgcgtgttctcacgcaggccgccatggagggcaagagcgacccgctggtgggc
ctcaaggagaacgtcatcatcggaaagctcatccccgccggcaccggccttgcgaagtac
cgcaacgtcgtggtcgaggcgacggaggaggccaagagcgagcggtaccccaaccgcatc
ttcgcctcggacggcgcctacagcgacgcggacctgagctacgtcgacttcgacagcttc
tccacggacgacttcggcacctacaactga
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integrated database retrieval system
