Microbacterium sp. Nx66: MICNX66_0797
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Entry
MICNX66_0797 CDS
T11414
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
minx Microbacterium sp. Nx66
Pathway
minx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
minx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MICNX66_0797 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minx03021
]
MICNX66_0797 (rpoB)
03400 DNA repair and recombination proteins [BR:
minx03400
]
MICNX66_0797 (rpoB)
Enzymes [BR:
minx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MICNX66_0797 (rpoB)
Transcription machinery [BR:
minx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MICNX66_0797 (rpoB)
DNA repair and recombination proteins [BR:
minx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MICNX66_0797 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CAD5138247
LinkDB
All DBs
Position
Nx66:811974..815477
Genome browser
AA seq
1167 aa
AA seq
DB search
MAAAPNASTSTTTKNGRGASRLSFAKISDTLTVPDLLALQTESFGWLVGNDAWKARVAEA
KAAGRTDVNENSGLGEIFEEISPIEDLGETMQLSFTNPYLEPEKYSIEECKERGKTYAAP
LYVEAEFMNHLTGEIKTQTVFMGDFPLQTDKGTFIINGSERVVVSQLVRSPGVYFDKTPD
KTSDKDIVSARVIPSRGAWLEFEIDKRDQVGVRVDRKRKQSVTVFLKALGMTSEEILAEF
AGYTSIEETLAKDTIVTKEDALRDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVG
RYKINHKLGLDTPLTESVLTVQDIVATIKYLVRLHAGTEETFEGIRGGKKTEIRLATDDI
DNFGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEF
FGTSQLSQFMDQNNPLAGLTNKRRLSALGPGGLSRDRAGVEVRDVHPSHYGRMCPIETPE
GPNIGLIGALATFARINSFGFIETPYRKVVDGVVTDQIDYLTASEEVDYNIAQANAPLDA
KGRFRESHVLARPKGGSGEVDLFLPEEIGYIDVSPRQMVSVATSLVPFLEHDDAQRALMG
ANMQRQAVPLLRSDSPLVGTGMEGYTAIDAGDVITAEKAGVVSEVSADRVVVMLDEGGTQ
EYHLRKFDRSNQGTSYNQKVVVNAGERVEVGEVIADGPATENGELALGKNLLVAFMTWEG
YNFEDAIILSQDLVKDDTLSSSHIEEYEVDARDTKLGKEEITRDLPNVSPELLKDLDERG
IIRIGAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTII
AVKEFNAEDGDDELGSGVNRRVVVYIAQKRKITEGDKLAGRHGNKGVIAKILPIEDMPFL
SDGTPVDIVLNPLGIPGRMNFGQVLETHLGWIAKQGWKVEGTPEWAAKLPQQAFEAAPGT
KVATPVFDGASEEEISGLLDSTLPTRDGLRLIDSSGKTQLFDGRSGEPFPAPISVGYMYI
LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLT
IKSDDILGRVKVYEAIVKGENIQEPGIPESFKVLMKEMQSLCLNVEVLSADGTLVNLRDT
DDEAFRAAEELGINISSRFEAASIDEI
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgctcccaacgcatccacatccaccaccaccaagaacggacgcggagcttcc
cgtctctcgttcgccaagatctccgacacgctgacggtcccggaccttctcgccctgcag
accgagtccttcggttggctggtcggcaacgacgcctggaaggcgcgcgtggccgaggcc
aaggccgccggtcgcaccgacgtgaacgagaacagcggtctgggcgagatcttcgaggag
atctccccgatcgaggacctcggcgagacgatgcagctgtcgttcacgaacccgtacctc
gagcccgagaagtactccatcgaggagtgcaaggagcgcggcaagacgtacgcggccccg
ctctacgtcgaggccgagttcatgaaccacctcacgggtgagatcaagacccagacggtc
ttcatgggcgacttcccgctgcagaccgacaagggcacgttcatcatcaacggctccgag
cgcgtcgtcgtctcgcagctcgtgcgctcgccgggtgtctacttcgacaagacccccgac
aagacgtccgacaaggacatcgtgtcggcgcgcgtcatcccgagccgcggcgcgtggctc
gagttcgagatcgacaagcgcgaccaggtcggcgtccgcgtcgaccgcaagcgcaagcag
tccgtcacggtcttcctcaaggcgctgggcatgaccagcgaggagatcctcgcggagttc
gccggctacacctcgatcgaggagacgctcgcgaaggacaccatcgtcaccaaggaagac
gcgctgcgcgacatctaccgcaagctgcgtccgggcgagcaggtcgccgccgaggccgcc
cgcgcgctgctcgacaacttctacttcaacccgaagcgctacgacctcgccaaggtcggc
cggtacaagatcaaccacaagctgggtctcgacaccccgctgacggagtcggtgctgacg
gtgcaggacatcgtcgccaccatcaagtacctcgtgcgtctgcacgcgggcaccgaggag
accttcgagggcatccgcggcggcaagaagaccgagatccgtctcgcgaccgacgacatc
gacaacttcggcaaccgtcgtatccgcgcggtcggcgagctgatccagaaccaggtccgc
accggtctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgag
gccatcacgccgcagaccctgatcaacgtgcgtcccgtcgtcgccgcgatcaaggagttc
ttcggaacctcgcagctgtcgcagttcatggaccagaacaacccgctcgcgggtctgacc
aacaagcgtcgtctgtcggctctgggccccggtggtctgagccgcgaccgcgccggcgtc
gaggtccgtgacgtccacccctcgcactacggccgcatgtgcccgatcgagaccccggaa
ggcccgaacatcggcctgatcggtgcgctcgcgaccttcgcgcgcatcaactcgttcggc
ttcatcgagaccccgtaccgcaaggtcgtcgacggtgtcgtgaccgaccagatcgactac
ctgaccgcctccgaggaggtcgactacaacatcgcgcaggccaacgcgccgctcgatgcg
aagggtcgcttccgcgagagccacgtgctcgcgcgcccgaagggcggcagcggtgaggtc
gacctgttcctcccggaggagatcggctacatcgacgtctcgccgcgccagatggtgtcg
gtcgcgacctcgctcgtgcccttcctcgagcacgacgacgcgcagcgcgcgctcatgggc
gccaacatgcagcgtcaggccgtgccgctgctccgcagcgactcgccgctcgtcggaacc
ggtatggagggctacaccgccatcgacgccggtgacgtgatcaccgctgagaaggccggt
gtcgtctccgaggtctccgcggaccgcgtcgtggtcatgctcgacgagggcggcacgcag
gagtaccacctgcgcaagttcgaccgctcgaaccagggcacctcctacaaccagaaggtc
gtcgtcaacgccggtgagcgcgtcgaggtcggagaggtcatcgccgatggccccgccacc
gagaacggcgagctggccctcggaaagaacctcctcgtcgcgttcatgacgtgggagggc
tacaacttcgaggacgccatcatcctgagccaggacctggtgaaggacgacaccctctcc
tcgagccacatcgaggagtacgaggtcgacgcccgcgacacgaagctcggcaaggaggag
atcacccgtgacctccccaacgtcagcccggagctgctgaaggacctcgacgagcgcggc
atcatccgcatcggcgccgaggtccgccccggcgacatcctcgtcggcaaggtcacgccg
aagggcgagaccgagctgtcggccgaggagcgcctgctccgcgcgatcttcaacgagaag
agccgcgaggtccgcgacacgtccctgaaggtgccgcacggcgagcagggcacgatcatc
gcggtcaaggagttcaacgccgaggacggcgacgacgagctcggctccggcgtcaaccgc
cgcgtcgtggtctacatcgcccagaagcgcaagatcaccgagggtgacaagctcgccggc
cgccacggcaacaagggtgtcatcgcgaagatcctccccatcgaggacatgccgttcctc
tcggacggcacgccggtcgacatcgtcctcaacccgctcggcatcccgggtcgaatgaac
ttcggccaggtgctcgagacccacctcgggtggatcgcgaagcagggctggaaggtcgag
ggcaccccggagtgggccgccaagctgccgcagcaggccttcgaggccgcgcccggcacc
aaggtcgccaccccggtgttcgacggtgccagcgaggaggagatctccggtctgctcgac
tcgacgctcccgacccgtgacggcctgcgcctgatcgactcgagcggcaagacgcagctg
ttcgacggccgctccggcgagccgttcccggcgccgatctccgtgggctacatgtacatc
ctgaagctccaccacctggtggacgacaagatccacgcccgctccaccggtccgtactcg
atgatcacccagcagccgctcggtggtaaggcgcagttcggtggacagcgcttcggtgag
atggaggtgtgggccctcgaggcctacggtgcggcgtacgccctccaggagctcctcacg
atcaagtccgacgacatcctcggccgcgtcaaggtgtacgaggcgatcgtcaagggcgag
aacatccaggagcccggcatccccgagtcgttcaaggtgctcatgaaggagatgcagtcg
ctctgcctgaacgtcgaggtcctctcggccgacggcacgctggtcaacctccgcgacacc
gacgacgaggcgttccgcgccgcagaggaactcggtatcaacatctccagccgcttcgag
gccgcctcgatcgacgagatctaa
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