Microbacterium sp. Nx66: MICNX66_1614
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Entry
MICNX66_1614 CDS
T11414
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
minx Microbacterium sp. Nx66
Pathway
minx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICNX66_1614 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minx03019
]
MICNX66_1614 (deaD)
03009 Ribosome biogenesis [BR:
minx03009
]
MICNX66_1614 (deaD)
Enzymes [BR:
minx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MICNX66_1614 (deaD)
Messenger RNA biogenesis [BR:
minx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MICNX66_1614 (deaD)
Ribosome biogenesis [BR:
minx03009
]
Prokaryotic type
rRNA helicases
MICNX66_1614 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
AAA_33
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAD5139064
LinkDB
All DBs
Position
Nx66:complement(1653813..1655651)
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AA seq
612 aa
AA seq
DB search
MTPEEVTPTDAPDESPATPGFEDLGITGPVLKAIKDLGYETPSPIQAATIPTLLAGRDVV
GMAQTGTGKTAAFALPVLERLDVTQKTPQALVLAPTRELALQVCEAFESYASRMKGVHVL
PVYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLAKGTLDLSELQYLVLDEADEMLKMGFA
EDVEQILAQTPEEKQVALFSATMPAQIRRLAQQYLRDPEEITVKSKTATNTNITQRYLVV
SYAQKVDALTRILEVENFDGMIVFVRTKNETETLAEKLRARGYSAAAINGDVPQVQRERS
VNQLKDGKLDILVATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRTGDAIS
FITPRERYLLKHIEKATRQQPTQMQLPSTEDVNTTRLARFDDAITTALSETTRIDAFRDI
IAHYVRHHDVPEGDVAAALAVVAQGATPLLLDPAQDALSQAVAADNRPPRERQTREPREP
RERRGRGDYTPYRIEVGRRHRVEPRQIVGALANEGGLGRDDFGAINIRPDFSIVELPANL
DPAVLDKLRNTRISGRLIEIAPDRGPGARRGSSSRDGDGRGRPTRYDKRDRDERPAHGDR
EEKPFRKPRHKA
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
gtgacccctgaagaagtgacccccaccgacgcccctgacgagtcccccgcaacccccgga
ttcgaggacctcggcatcaccgggccggtcctcaaggccatcaaggatctcggttacgag
accccctcgcccatccaggccgcgaccatcccgacgctgctcgccggccgcgatgtggtc
ggcatggcgcagaccggcaccggcaagaccgccgccttcgccctccccgtgctggagcgg
ctcgacgtcacgcagaagacgccgcaggccctcgtcctcgccccgacccgcgagctcgcg
ctgcaggtctgcgaggctttcgagtcctacgcgtcgcgcatgaagggcgtgcacgtgctc
cccgtctacggcggtcagggctacggggtgcagttgtccgcgctccgccgtggcgtgcac
gtcgtcgtgggaacccccggccgcatcatggaccacctcgccaagggcacgctcgacctc
tccgagctgcagtacctcgtgctggacgaagccgacgagatgctgaagatgggcttcgcc
gaagacgtcgagcagatcctcgcgcagacgccggaggagaagcaggtcgccctgttctcg
gcgacgatgcccgcgcagatccgccgcctcgcgcagcagtacctccgcgacccggaggag
atcacggtcaagtccaagaccgcgaccaacacgaacatcacccagcgctacctcgtcgtc
tcctacgcgcagaaggtggacgctctgacccgcatcctcgaggtggagaacttcgacggg
atgatcgtcttcgtccgcacgaagaacgagaccgagaccctggccgagaagctccgcgcc
cgcggatactccgccgccgcgatcaacggcgacgtgccgcaggtgcagcgcgagcgcagc
gtcaaccagctcaaggacggcaagctcgacatcctcgtcgccacggacgtcgccgcccgc
ggcctcgacgtcgagcgcatcagccacgtggtcaacttcgacatccccaccgacaccgag
tcgtacgtccaccgcatcggacggaccgggcgggccggccggacgggtgacgcgatcagc
ttcatcaccccgcgcgagcgctacctgctcaagcacatcgagaaggccacgcgtcagcag
cccacgcagatgcagctcccgagcaccgaggacgtgaacacgacgcggctcgcccgcttc
gacgacgccatcacgaccgcgctctcggagacgacgcgcatcgacgcgttccgcgacatc
atcgcccactacgtgcggcatcacgatgtgccggaaggcgacgtcgcggccgctctcgcc
gtggtcgcccagggcgccacgccgctgctcctcgaccccgcccaggacgccctgtcgcag
gcggtggccgccgacaaccgcccgccgcgcgagcggcagacgcgggagccgcgcgaaccc
cgggagcgtcgcggccgcggcgactacacgccgtaccgcatcgaggtgggtcgccggcac
cgcgtcgagccgcgacagatcgtgggcgcgctcgcgaacgagggcggtctgggccgcgac
gacttcggggcgatcaacatccgtcccgacttctcgatcgtcgagcttccggcgaacctc
gaccccgccgtcctcgacaagctccgcaacacccgtatctcgggacgactgatcgagatc
gctcccgaccgtggccccggggcgcgacgcgggtcgtcctcgcgcgacggcgacggccgt
ggtcgcccgacccgctacgacaagcgcgaccgcgacgagcgcccggcgcacggcgaccgc
gaggagaagcccttccggaagccccgtcacaaggcctga
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