Microbacterium sp. Nx66: MICNX66_1994
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Entry
MICNX66_1994 CDS
T11414
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
minx Microbacterium sp. Nx66
Pathway
minx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICNX66_1994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minx03019
]
MICNX66_1994
03009 Ribosome biogenesis [BR:
minx03009
]
MICNX66_1994
Enzymes [BR:
minx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MICNX66_1994
Messenger RNA biogenesis [BR:
minx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MICNX66_1994
Ribosome biogenesis [BR:
minx03009
]
Prokaryotic type
rRNA processing factors
MICNX66_1994
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
CAD5139618
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Position
Nx66:complement(2034626..2037193)
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AA seq
855 aa
AA seq
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MADENNDNNAPALDAPADAAEPLTAPTALAAEESEDTSRDQEDADDAAAEAAADDRAAEN
AAADDAAAAADDAAAAAVEDAAAADEAAADAIDAAAQVEEAPAEQGPVEPAPAEETPAEE
APAEESPAEETPAEEASAEAAPADKTPAEPEKPAAVTAVSLGLLPEVFVSQVSTQLHFYA
PEVVPLPARPGRDDRAPERDQDEPGAGRRGRRRRGGSEGDEQREEPRQRQRVVEYITEPK
AIKGSTRLEAKKQRRRDGRDAGRRRPVVTEAEFLARRESVDRKMVVRSKNGRTQIGVLED
GVLVEHYVARNQDASLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYSGEVDWDGVETG
NQPRRIELALKPGDRVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMNGISRKLPD
NERARLKRILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTSQWEHIQKQVESQQAPAL
LHAEPDLLVKIVRDVFNEDFTKMLIQGEESQRTIRAYLESVAPDLLERVEAYEDDVDPFD
AFRITEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEA
AEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECLSRDRTKHQVAEVTSLGLVQ
MTRKKLGLGLLETFSEACEVCAGRGVIVHHDPVVKHRANGSNNGNNGGNGNGGRRQRGNG
GSNNGNGGGNNTSAPAAPPVTHSITEGAKSALAQIAASTIVPSGEPAAEAPAAESAPVPA
SERPKKARKKRGDRKGPKTPTEELLDSVLDALPEPKAPGQGRGRRRVTTAALSGTPVSVN
SEASVPPVASADPEA
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgagaacaatgacaacaacgcccccgccctcgacgccccggctgacgccgcg
gagccgctgacggcgcccaccgctctcgccgcggaggagtcggaggacacctcgcgggat
caggaggacgcggacgacgcggcggcggaggccgcggcggacgaccgcgctgccgagaac
gcggcggccgatgacgccgctgcggcggcggacgatgcggctgcggccgctgtcgaggac
gctgccgccgcagacgaggccgccgccgacgcgatcgacgcggcggcacaggtcgaggag
gcccctgcggagcagggacccgtcgagccggccccggccgaggagactcccgcggaggag
gctcccgccgaggaatcccccgccgaggaaacccctgcggaagaggcttccgctgaggcg
gcgcctgcggacaagacccccgccgagcccgagaagcccgcggccgtcaccgccgtgtcg
ctcggtctgctgcccgaggtgttcgtgtcgcaggtgtcgacgcagctgcacttctacgcg
ccggaggtcgttccgctgcccgcgcgccccggtcgtgacgaccgtgcgccggagcgcgac
caggacgagcccggtgccggtcgccgcggtcgtcggcgccgcggcggatccgagggcgac
gagcagcgggaagagccgcggcagcgtcagcgggtcgtcgagtacatcaccgagccgaag
gccatcaagggctcgacgcgcctcgaggccaagaagcagcgccgtcgtgacggacgtgac
gccggccgtcgtcgtccggtcgtgaccgaggccgagttcctcgcgcgccgcgagtccgtc
gaccgcaagatggtcgtgcgctccaagaacggccgcacgcagatcggtgtgctggaggac
ggcgtgctcgtggagcactacgtcgcccgcaaccaggacgcctcgctgatcggcaacgtc
tacctcggtcgcgtgcagaacgtgcttcccagcatggaggccgcgttcgtcgacatcggc
cgcggccggaacgccgtgctctactcgggcgaggtggactgggacggcgtcgagaccggc
aaccagccccgccgcatcgagctcgctctgaagccgggcgatcgcgtgctcgtccaggtc
acgaaggacccggtgggtcacaagggtgcccgcctcacgagccagatctcgctgcccggc
cgctacctggtgtacgtgcccggcggttccatgaacggcatcagccgcaagctgcccgac
aacgagcgtgcccgcctcaagcgcatcctcaaggaggtgctgcccgagtcgtccggcgtg
atcgtgcgcacggccgcggagggcgcgaccgaggatcagctgacccgcgacgtgcagcgc
ctcacctcccagtgggagcacatccagaagcaggtcgagagccagcaggctccggcgctc
ctgcacgccgagcccgatctgctcgtgaagatcgtccgtgacgtcttcaacgaggacttc
acgaagatgctcatccagggcgaggagtcgcagcgcaccatccgggcgtacctggagagc
gtcgcccccgacctgctcgagcgtgtcgaggcgtacgaggacgacgtcgatccgttcgac
gcgttccgcatcacggagcagatcgagaaggcactggaccgcaaggtctggctgccctcc
ggcggttcgctcgtgatcgaccgcaccgaggccatgacggtcgtcgacgtcaacaccggc
aagttcgtcggatccggtggcaacctcgaggagacggtcacgaagaacaacctcgaggcc
gccgaggagatcgtccgccagctgcgtctgcgcgacatcggcggcatcatcgtggtcgac
ttcatcgacatggtgctggagtccaaccgcgacctcgtgctgcgccgactcatcgagtgc
ctgagccgcgaccgcacgaagcaccaggtggccgaggtcacctcgctcggtctcgtgcag
atgacacgcaagaagctcggtctcgggctgctggagaccttcagtgaggcgtgcgaggtc
tgtgccggtcgcggcgtgatcgtgcaccacgacccggtcgtgaagcaccgtgcgaacggc
agcaacaacggcaacaacggcggtaacggcaacggcggacgccgtcagcgcgggaacggc
ggcagcaacaacggcaacggcggtggcaacaacacctccgcacctgccgcgccgccggtg
acccacagcatcaccgagggggcgaagtcggccctcgcgcagatcgccgcctccacgatc
gtgccgtccggcgaaccggccgccgaggcaccggcggccgagtccgcgcccgtccccgct
tccgagcgcccgaagaaggcccggaagaagcgcggtgaccggaaggggccgaagacgccc
accgaggagctgctcgactcggtgctggatgcgcttccggagcccaaggcgcccggccag
ggtcgtggacggcgccgggtcaccaccgccgccctctccggtacgccggtgtcggtgaac
tcggaggcgtcagtgccgccggtcgcgtccgcggacccggaggcctga
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