Microbacterium sp. No. 7: AOA12_07415
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Entry
AOA12_07415 CDS
T04102
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mio
Microbacterium sp. No. 7
Brite
KEGG Orthology (KO) [BR:
mio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mio03019
]
AOA12_07415
Enzymes [BR:
mio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AOA12_07415
Messenger RNA biogenesis [BR:
mio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AOA12_07415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
T2SSE
SLFN-g3_helicase
nSTAND3
HA2_N
NACHT
AAA_30
ResIII
Ploopntkinase3
PhoH
FtsK_SpoIIIE
MoCF_biosynth
TsaE
Zeta_toxin
UvrD-helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ALJ19741
UniProt:
A0A0P0DZA5
LinkDB
All DBs
Position
complement(1589780..1593652)
Genome browser
AA seq
1290 aa
AA seq
DB search
MSAPRIVYPPELPVSAAREEIAAAIRDHQVVIVAGATGSGKTTQLPKICLELGRERIAHT
QPRRLAARTIAERVAEELGVELGGAVGYKVRFTDKVSAGTSIALMTDGILLGEIHRDREL
RRYDTIIIDEAHERSLNIDFLLGYLTRLLPKRPDLKVVVTSATIDPESFARHFSDEGRRT
VPIIEVSGRTYPVEVRYRPHDEAAEDDVDGLLAALRELDREPAGDVLVFLPGEAEIRDAM
DAVRGMYQGDARPTEVLPLFGRLSAAEQHRVFEPSAVAGVRRRVILSTNVAETSLTVPGI
RYVVDTGTARISRYSARSKVQRLPIEPISQASAQQRSGRAGRTSAGVAIRLYAEDDFARR
PEFTEPEILRTQLASVILQMIALGFGDIERFPFLTKPDSRGVKAAFDLLTELRAVTRTDH
GPRLTDIGRRIARLPIDPRFARMLVEAERLGVTGSVLPIVAGMSIQDVRERPSADDQGSR
REEADRLHARFTDPASDFLTLLNLWNHLQEQQRELGSSAFRRLCRAEMLNYVRVREWFDV
DRQLRQLTGAPRAADDAGTHEPALVHRAILAGLLSHIGILDTRSLQKADGKRKPLPQYRG
ARGATFAIFPGSGLRKASPDAVMAAELVETSRLFARTVAEVDPEWAEELAGDLAHRQISD
PHWSKDAGAAVAAEKVTLFGVEIVPRRRVQLARIDREQARELFLRHALVDGEWNSQYLDK
RLTAFERRNLELRRRLERIEERERRRDILAGDEAVFAFYDARIPADVVDTRSFEAWWRTA
SARTPRLLDMTEADLAGDASRSDERDFPARWRQGDQVLSLAYRFEPGSPDDGVSVVVPLA
LLAQLSPEGFDWQVPGMRDELIAALIRALPKAIRRHVVPAADWAAKLSAELADAGPESHD
GRPRATLREALAARIQRVANQPVTAGDFDLQRVPGHLTMSFRAVDARGRTIGSSRDLGEL
QDRLAGRAREAVSRTLAPRPSSAARPAPADGAAQPAGPVAPAVAERRGITAWDVGTLPDV
VDTPVAGGVVRGYPALVDEKDAVALRIESTPERAAQLTHAGVRRLLLLAVPSASAYVLDH
LTAAEKLALAASPYPSARTLVEDARVALADAVIARTEPRVRTEEQFARVRDAFSAVAVDE
LFQTVSLVARILTLQREVERAVRGQNSMTLLAALGDVKTQLAGLVFPGFIARTGIARLAH
LPRYLQAALDRVRGLGDNAGRDRQRLTELERAAALFADAGGTIPCPDDAPAHLVHARWLL
EEYRVSLFAQHLGTAEPVSIQRVAKALAAR
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgccgcgcatcgtctatccccccgagctcccggtcagcgccgcgcgcgaggag
atcgcggccgcgatccgcgaccaccaggtcgtgatcgttgcgggcgccaccggctcgggc
aagacgacgcagctgcccaagatctgcctcgagctgggccgcgagcgcatcgcgcacacg
cagccgcgccggctggcggcgcgcacgatcgccgagcgcgtggccgaggagctcggcgtc
gagctgggcggcgcggtgggctacaaggtgcgcttcaccgacaaggtgtcggccggcacg
agcatcgcgctgatgaccgacggcatcctgctgggcgagatccaccgcgatcgcgagctg
cgccgctacgacacgatcatcatcgacgaggcgcacgagcgctccctcaacatcgacttc
ctgctcggctacctgacgcggctgctgccgaagcgtcccgacctcaaggtcgtcgtcacg
agcgccacgatcgaccccgagagcttcgcccggcacttctccgacgagggccgccgcacc
gtgccgatcatcgaggtgtcgggccgcacgtaccccgtcgaggtgcgctaccgcccgcac
gacgaggccgcggaggacgacgtcgacggcctgctcgccgcgctgcgcgagctcgaccgc
gagcccgcgggcgacgtgctcgtgttcctccccggcgaggccgagatccgcgacgcgatg
gatgccgtccgcggcatgtaccagggcgacgcgcggccgacggaggtgctgcccctgttc
gggcggctctccgccgccgagcagcaccgcgtgttcgagccgtcggccgtcgcgggcgtg
cgccgccgcgtcatcctctcgacgaacgtcgccgagacgagcctcacggtccccggcatc
cgctacgtcgtcgacacgggcaccgcgcgcatctcccgctacagcgcgcggtcgaaggtg
cagcgcctgccgatcgagccgatctcgcaggcgtcggcgcagcagcgctcggggcgcgcg
ggccgcacgtcggccggcgtcgcgatcaggctgtacgccgaggacgacttcgcgcggcga
ccggagttcaccgagcccgagatcctgcgcacgcagctcgcgtcggtgatcctgcagatg
atcgcgctcggcttcggcgacatcgagcgcttcccgttcctcacgaagcccgacagccgc
ggcgtgaaggccgccttcgacctgctcaccgagctgcgcgccgtcacgcgcaccgaccac
ggcccgcggctcaccgacatcggccgccgcatcgcccggctgccgatcgacccgcgcttc
gcccgcatgctcgtcgaggccgagcgcctcggcgtcacgggctcggtgctgccgatcgtg
gcgggcatgtcgatccaggacgtgcgcgagaggccttccgccgacgatcaggggtcgcgt
cgcgaggaggccgaccggttgcacgcccggttcaccgaccccgcgagcgacttcctcacc
ctgctgaacctgtggaaccacctgcaggagcagcagcgggagctcgggtcgagcgcgttc
cgccggctgtgccgcgccgagatgctgaactacgtgcgcgtgcgggagtggttcgacgtc
gaccggcagctgcggcagctcaccggcgcgccgcgcgcggcggacgacgccggcacgcac
gagcccgcgctcgtgcaccgcgccatcctcgccggcctgctctcgcacatcggcatcctc
gacacccgctcgctgcagaaggccgacggcaagcgcaagccgctcccccagtaccgcggg
gcgcgcggcgcgacgttcgcgatcttcccgggctccgggctcagaaaggcgagcccggat
gccgtcatggcggccgagctcgtcgagacgtcgcggctgttcgcccgcacggtcgccgag
gtcgaccccgagtgggccgaggagctcgcgggcgacctggcgcaccgtcagatcagcgac
ccgcactggtcgaaggatgccggggccgccgtcgccgccgagaaggtcaccctgttcggc
gtcgagatcgtcccccgccggcgcgtgcagctcgcgcgcatcgaccgcgagcaggcgcgc
gagctgttcctgcggcacgcgctcgtcgacggcgagtggaacagccagtacctcgacaag
cggctgaccgcgttcgagcgccgcaacctcgagctgcggcggcggctggagaggatcgag
gagcgggagcggcgtcgcgacatcctcgcgggcgacgaggcggtgttcgccttctacgac
gcgcgcatccccgccgacgtcgtcgacacgcggtcgttcgaggcgtggtggcgcaccgcg
agcgcgcgcacgccgcggctgctcgacatgaccgaggccgacctcgcgggcgacgcgtcg
cgctccgacgagcgcgacttccccgcgcgctggcggcagggcgatcaggtgctctcgctc
gcctatcggttcgagccgggctcccccgacgacggcgtgagcgtcgtcgtgccgctggcc
ctgctcgcccagctgtcgcccgagggcttcgactggcaggtgccgggcatgcgcgacgag
ctgatcgcggcgctcatccgggccctccccaaggcgatccgccggcacgtcgtgcccgcc
gccgactgggccgcgaagctgtcggccgagctcgccgacgccggccccgagtcgcacgac
ggccggccgcgcgcgacgctgcgggaggcgctcgcagcccgcatccagcgcgtcgcgaac
cagcccgtgaccgccggcgacttcgacctgcagcgcgttcccggacatctcacgatgtcg
ttccgcgcggtcgacgcgcgcgggcgcacgatcggatcgtcgcgcgatctgggtgagctg
caggaccgcctggccggccgcgcacgcgaggcggtctcgcgcacgctcgcgccgcggccg
tcgagcgcggctcgccccgcgcccgccgacggtgcggcgcagccggccgggccggtcgcc
cccgccgtcgccgagcgccgcggcatcacggcgtgggacgtcggcacgctgcccgacgtc
gtcgacacgcccgtcgcgggcggcgtcgtgcgcgggtatccggcgctcgtcgacgagaag
gacgccgtcgcgctgcgcatcgagtcgaccccggagcgcgccgcgcagctcacgcacgcg
ggcgtgcgccgcctgctgctgctcgccgttccctcggcatccgcctacgtgctcgaccat
ctcacggcggccgagaagctcgcgctcgccgcgtcgccctacccgtcggcgcgcacgctc
gtcgaggacgcgcgcgtcgccctggcggacgccgtgatcgcgcgcaccgagccgcgggtg
cgcacggaggagcagttcgcccgcgtgcgcgacgcgttctcggccgtcgcggtggacgag
ctgttccagacggtgtcgctcgtcgcccgcatcctcacgctgcagcgcgaggtggagcgg
gcggtgcgcggccagaactcgatgaccctgctggccgcgctcggcgatgtgaagacgcag
ctggcgggtctcgtgttccccgggttcatcgcgcgcacggggatcgcgcgcctcgcccac
ctgccgcgctatctgcaggccgcgctcgatcgcgtgcggggcctcggcgacaacgcgggc
cgcgaccgccagcggctcacggagctcgagcgggccgcggcgctgttcgccgacgccggc
ggcacgatcccctgcccggacgatgcgcccgcgcacctcgtgcacgcccgctggctgctc
gaggagtatcgcgtgagcctgttcgcgcagcacctcggcaccgccgagcccgtctccatc
cagcgcgtcgccaaggccctcgccgcccgctga
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