Microbacterium sp. PAMC 28756: AXH82_09680
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Entry
AXH82_09680 CDS
T04312
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mip
Microbacterium sp. PAMC 28756
Brite
KEGG Orthology (KO) [BR:
mip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mip03019
]
AXH82_09680
Enzymes [BR:
mip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AXH82_09680
Messenger RNA biogenesis [BR:
mip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AXH82_09680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_16
Cas3-like_C_2
AAA_19
Helicase_RecD
AAA_11
nSTAND3
ParA
AAA_25
ResIII
RoxA-like_Cyt-c
AAA_30
MoCoBD_2
Motif
Other DBs
NCBI-ProteinID:
AMG83620
LinkDB
All DBs
Position
complement(2027698..2030274)
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AA seq
858 aa
AA seq
DB search
MTRQTGRVTRAAFDLTAIGAGLSFAGALDDLSTALDTSGSVVVTAPPGTGKTTLVPPLLA
SRRTGRVIVTQPRRIAARAAARRLAQLDGTPLGSRVGFTVRGERTVGPDTRVEFVTAGVL
LRRMLDDPGLDGVSAVIIDEVHERALETDLLLGLLSEVRELRDDLVVIAMSATLDADRIA
AVIGTEESPASIVDHDVPAFPLTERWAPSSAPRLDERGVTRGFLDHVASVTATAAAELVR
NGPEADVLVFAPGAREVAEIARRVRDRNSAFDVRELHGQIPLAEQDAVIRGRASEARPRI
IVATSLAESSLTVPGVRLVVDSCLARQPQRDAARGMTGLVTTAASRSSCVQRAGRATRQG
PGTVIRCVDERTYAAAPARPSPEIATADLTDAALLLACWGAPGGAGLRMIEPLRADSLAD
AVTVLRGLGAIDDDGRATAEGRALARIPTDPRLARALRDGSPAVGSRLAAEVVALLGGDQ
RISDADVARALVALRGGSTAEARRWREDARRLERLVAPAPDTRAGLDGVGLVIALAFPER
VAHRAEHSGSGATFLLASGTRAGVSGALAASEWLAVADVARASSRTAAGSGAVIRAAAAL
TEEQVERAAGPLMSDRVEAEFVGGRVQARRERRISAIVRSSVPVRPSASEGRDAVGRALR
RDGLGMFTWSDGAEALRRRLALLRRELGDPWPDVSDAGLLASLDVWLAPELDALASGTPA
SRLDLSSALRRLLPWPEAVHLDALVPERLEVPSGSRVRITYPEPDGDATARPVVAVKLQE
CFGWAETPRLVDGRVPVLFHLLSPAGRPLAVTDDLASFWSGPYAQVRAEMRGRYPRHPWP
EDPWAAVPTKHTKNRAAR
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgacccggcagactggacgggtgacccgcgccgccttcgacctcaccgccatcggcgcc
ggtctgtctttcgcgggcgccctcgacgacctctccaccgccctcgacacgagcggatcc
gtggtcgtgaccgcgccgccaggtacgggcaagaccacgctcgtcccgccgctcctcgcc
tcacgccgcaccggacgcgtgatcgtcacccagccgcgccggatcgccgcgcgcgcggcc
gctcgccgactcgcacagctcgacggcacacccctcggctcccgggtgggcttcaccgtc
cgtggcgagcgcactgtcgggccggacacgagggtcgagttcgtcaccgctggcgtgctc
ctgcgacggatgctcgacgaccccggactcgacggcgtgagcgcggtcatcatcgacgag
gtgcatgagcgtgccctcgagaccgacctcctcctcggcctgctctccgaggtgcgcgag
ctgcgagatgacctcgtcgtcatcgcgatgtccgcgaccctcgacgcggaccggatcgcc
gcggtcatcgggaccgaggagtctcccgcgtcgatcgtcgaccacgacgtcccggctttc
cccctcaccgagcgctgggcaccgagttctgcgccccgcctcgacgaacgcggagtcacc
cggggcttcctcgatcacgtcgcgagtgtcaccgccaccgccgccgccgagctcgtccgg
aatggccccgaagcggatgtgctcgtgttcgcccccggcgcgcgcgaagtggcggagatc
gcgcgacgagtccgcgaccggaacagcgccttcgacgtccgggagttgcacggccagatc
ccgctggcggagcaggatgccgtgatccgcggtcgtgcgtcggaagcccggccccgcatc
atcgtcgccacctccctcgccgagtcgtctctcacggtgccgggtgtgcggctggtcgtg
gacagctgcctggcccggcagccgcagcgcgacgccgcccgcgggatgaccggtctggtc
accaccgccgcctcccgttcctcgtgcgtgcagcgagccggacgcgccacccgacagggc
cccggcaccgtcatccgctgtgtggacgagcgcacctatgctgccgctcctgcgcggccg
tcgccggagatcgccacggcagacctcaccgacgccgccctcctgctcgcctgctggggc
gccccgggcggcgccggcctgcgcatgatcgaaccgctgcgagccgacagcctggccgat
gccgtcacggtgctccgcggtctcggagcgatcgacgacgacgggcgcgccacggcagag
ggccgtgcgctggcacgaatccccaccgatccacggttggccagagcgctgcgggacggc
agccccgcggtggggagccggctcgccgccgaggtcgtggcgcttctcggcggggaccag
cgcatctcggacgccgatgtcgcccgcgctctcgtcgcgttgcgcggagggagcacggcc
gaggcccggcggtggcgcgaggacgctcgccgtctggaacgcctggtcgctccggcaccg
gacacccgcgccggtctcgacggcgtcggtctcgtgattgcgctggccttccccgagcgc
gtcgcccaccgcgccgagcactcgggatcgggagcgacgttcctgctggcgtccggcacc
cgggccggtgtcagcggcgccctggccgcgtcggaatggctcgccgtggccgacgtcgcc
cgagcctcgtcccggacggcagccggctccggtgcggtcatccgcgccgcagcggccctc
accgaggagcaggtggagcgcgcggcaggccccttgatgagcgaccgcgtcgaggccgag
ttcgtcggaggccgcgtacaggcccgccgcgaacgccggatcagtgcgatcgtgcgctca
tcggtgccggtgcgcccgtcggcctcggaaggccgggatgccgtgggccgagcactccga
cgcgatggcctcggcatgttcacgtggtccgacggggcggaggccctgcgccgccgactc
gcgctactgcgacgtgagctcggagacccctggcccgatgtgtcggacgcgggtctgctc
gcatcgctcgacgtgtggctggcaccggagctcgacgctctcgcctccggcacgcccgcg
agtcggctggatctgtcatccgcccttcgccgtctgctgccctggcccgaggccgtgcac
ctcgatgcgctcgtcccggagcggctcgaggtgcccagcggctcccgtgtacgcatcacc
tacccggagcccgacggcgacgcgaccgcacggcccgtcgtggcggtgaagctgcaggag
tgcttcggctgggcggagactccccggctcgtggacggccgcgtccccgtgctcttccat
ctgctgtccccggcggggcggccgctcgcggtcaccgacgacctcgcctcgttctggtcg
ggcccctacgcccaggtacgcgccgagatgcgcggccgctacccccggcacccgtggccc
gaggacccgtgggccgccgtgccgacgaagcacaccaagaaccgcgccgcgcgctga
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