Microbacterium sp. PAMC 28756: AXH82_13110
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Entry
AXH82_13110 CDS
T04312
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mip
Microbacterium sp. PAMC 28756
Pathway
mip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXH82_13110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mip03021
]
AXH82_13110
03019 Messenger RNA biogenesis [BR:
mip03019
]
AXH82_13110
Transcription machinery [BR:
mip03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AXH82_13110
Messenger RNA biogenesis [BR:
mip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AXH82_13110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
NACHT
Spore_III_AA
ATPase_2
AAA_22
VWA_2
Glyco_tranf_2_3
Motif
Other DBs
NCBI-ProteinID:
AMG84227
LinkDB
All DBs
Position
2769009..2770961
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AA seq
650 aa
AA seq
DB search
MENLSETQNDQAAPTADAPVAEQATESAPAKKRAPRRANTATAAAKAAKAAEESGSAEAP
AAAGDSAEAAEAAPKAKAPRRTRAKKADAEAPAEAAPAEAAPAAETTEAPAEAPKSARGR
RTKKADAEASEAKTEKAEAAPADSAAETADAGTAQGGRAKNDAAKSESKNDGAAAKNEAE
ADAPSKDSSGEADNGEEQGGRGRSRNRNRNRGRGQGGGQEQAQNAPADDDQSGNGNGRNR
QRNKRRSGGQVDEFETEITEDDVLIPIAGILDVLDNYAFVRTTGYLAGPSDVYVSLGQVK
KYNLRKGDAVVGSIKQPREGEQQGRQKYNALVKVDSINGLSVDDAATRVEFGKLTPLYPQ
ERLRLETAPEKLTQRIIDLVAPIGKGQRGLIVAPPKAGKTIVLQQIANAIAQNNPEVHLM
VVLVDERPEEVTDMERTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGRDVVVLLD
SITRLGRAYNLAAPASGRVLTGGVDASALYPPKRFFGAARNIENGGSLTILATALVETGS
KMDEVIFEEFKGTGNSELRLSRQLADKRIFPAVDVNASSTRREEMLLSADEVKITWKLRR
ALAGLDPQQALEVVLGKLKETHSNVEFLVQMQKSIPTLPSGAHGHDNNIR
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacctctccgagacccagaacgatcaggcggctccgaccgccgatgcccccgtc
gccgagcaggcgaccgaatccgctccggccaagaagcgcgcaccgcgtcgggcgaacacc
gctacggctgcggccaaggcggccaaggccgcggaggagtccggctcggcggaggcccct
gcggctgccggcgactccgccgaggcggcggaggcggccccgaaggcgaaggctccgcgc
cgcacgcgggcgaagaaggcggacgccgaggctccggccgaggccgcaccggccgaagcg
gcaccggctgccgagaccaccgaggcgcccgccgaggcccccaagtccgcccgcggccgt
cgcacgaagaaggcggatgccgaggcctcggaggcgaagaccgagaaggccgaggccgca
ccggccgacagcgcggcggagaccgccgacgcgggcaccgcccagggcggccgcgccaag
aacgacgcggcgaagagcgagtcgaagaacgacggcgctgccgcgaagaacgaggccgag
gcggacgctccctcgaaggactcgtccggcgaggccgacaacggcgaggagcagggcggt
cggggccgcagccgcaaccgcaaccgcaaccgtggccgtggccagggcggcggtcaggag
caggcgcagaacgcgccggccgacgacgaccagtcgggtaacggcaacggccgcaaccgt
cagcgcaacaagcgtcgcagcggcggccaggtcgacgagttcgagacggagatcaccgag
gacgacgtcctcatcccgatcgccggcatcctcgacgtgctcgacaactacgccttcgtg
cgcaccaccggttacctggccggcccgagcgacgtatacgtctcgctcggccaggtcaag
aagtacaatctccgcaagggcgacgccgtcgtcggctccatcaagcagccgcgcgagggc
gagcagcagggtcggcagaagtacaacgccctggtcaaggtcgactcgatcaacggcctc
tcggtcgacgatgcggccacccgcgtggagttcggcaagctcaccccgctctacccgcag
gagcgtctgcggctggagacggctccggagaagctcacgcagcggatcatcgacctcgtc
gcgccgatcggcaagggccagcgcggcctcatcgtcgcaccgcccaaggccggcaagacg
atcgtcctgcagcagatcgccaacgcgatcgcgcagaacaaccccgaggtccacctcatg
gtcgtgctcgtcgacgagcgccccgaagaggtcaccgacatggagcgcaccgtgaagggc
gaggtcatcgcctccaccttcgaccgccccgcggaggaccacacgacggtcgccgagctc
gcgatcgagcgggccaagcgcctcgtcgagctgggccgcgacgtggtcgtgctgctcgac
tcgatcacccgcctcgggcgcgcgtacaacctggccgctccggcgtccggccgcgtgctc
accggcggcgtcgacgcgtccgcgctctacccgccgaagcgcttcttcggtgccgcgcgc
aacatcgagaacggcggatccctcacgatcctcgccaccgcgctcgtcgagaccggttcc
aagatggacgaggtcatcttcgaggagttcaagggcaccggcaacagcgagctgcggctg
tcgcgtcagctggccgacaagcggatcttcccggcggtcgacgtcaacgcgtccagcacc
cgccgcgaggagatgctgctctcggccgacgaggtcaagatcacctggaagctgcgccgt
gctctcgccggcctcgacccgcagcaggccctggaggtcgtgctcggcaagctgaaggag
acccactccaacgtggagttcctcgtgcagatgcagaagtccatcccgacgctgccctcg
ggcgctcacgggcacgacaacaacatccgctga
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