Microcystis sp. MC19: B5D77_09285
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Entry
B5D77_09285 CDS
T05365
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
miq
Microcystis sp. MC19
Pathway
miq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
miq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5D77_09285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
miq03019
]
B5D77_09285
03400 DNA repair and recombination proteins [BR:
miq03400
]
B5D77_09285
Enzymes [BR:
miq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B5D77_09285
Messenger RNA biogenesis [BR:
miq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B5D77_09285
DNA repair and recombination proteins [BR:
miq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B5D77_09285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_11
HTH_5
HTH_20
TrmB
MarR
HTH_24
HTH_29
TnsD
HTH_36
Motif
Other DBs
NCBI-ProteinID:
AVQ71471
LinkDB
All DBs
Position
1840611..1842722
Genome browser
AA seq
703 aa
AA seq
DB search
MAAIDSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKG
VTVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERL
LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTA
TATQQVREDIIQQLGLRDTSIHTASFNRPNLYYEVQPKTSKSYQQLYQYIKGQKGSGIVY
CISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMGINK
PDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQNEQQ
KARQQLRQVLDYAEGTECRRSSVLGYFGESFAGNCGNCDNCRNGKNNQDWTIEAQKFLSC
VARTGQKFGMMHIINVLRGRKGERISQYQHHLLSTYGIGKDKTVEEWKRLSRSLVQQNIL
VETEDDFRILKLNQHSWEVMRKQRSVFIAVPQKANGQIVGDDNPNMVESDLLFERLRQLR
KKIADSQGVPPYVIFHDSSLRLMAQSKPRNLGQFRQISGVVHSKVQQYGDIFIAAINDFC
QDSLPSTQFLTLQYYQDGLNAEEIARKRSLKVSTIYEHLAKLLEAGYEIDINQLVSKNKQ
EYIRLAIKKVGDQSLKTLKENLGDNYSYEEIKLVVAWQRRPRQ
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaattgactctttagaaaaagccttaaaatatcactttggctacgatcaattt
cgaccgaatcaacgccaaataattgaggctgctttaaacaatcaggatttattagtaatt
atgcccaccggaggcggtaaatctctctgttttcagctaccagctttaatcaaaaaaggg
gtgacggtggtggtttctcccctaattgctttaatgcaggatcaagtaactgctttagct
gataatggcatcggggcaacatttctcaatagcactttaaacgctaaacaagtcagagaa
agagaatctttaatcttgcaaggaaaaattaaacttttatatgtcgccccagaaagatta
ttatcgcctagttttttagactttttagctgttattgataattacctcggtttagcctgt
ttagcggtggatgaagctcactgtgtctccgattggggtcatgattttcgccctgaatat
cgacaaattaaacaagttcgtcaacgctttccctccgtgccaattctggctttaactgcc
accgctactcaacaggttagagaagatattatccaacaattaggattgcgagatacttcc
attcatactgctagttttaatcgtcctaatctttattatgaagtgcaacctaaaaccagt
aaatcctatcagcaattgtatcaatatattaaaggacaaaaagggtctggcattgtttat
tgtatcagtcgtaaaaccgtcgataaagtagccgaacagttacaaaaagatggtattgat
gccctaccctatcacgcgggtatggatgatcgggaaagaagcgaaaatcaaacccgtttt
attcgggatgatgtgcagattatggtggcaacaattgccttcggtatggggattaataaa
ccggatgtgcgctttgtcgttcattacgatttaccacgcaatttagagggatattatcaa
gaatctggccgtgcggggagggacggagaaccggctaaatgtaccctcttttttagcttt
gccgatgccagaaaaattgagtattttattaaccaaaaaaccgagcaaaatgaacagcag
aaagctcgtcaacaattgcgacaggtgttagattatgccgaggggactgaatgtagaaga
tcgagcgtactaggttactttggagaaagttttgcgggtaactgtggtaactgtgataac
tgtcggaatggtaaaaataaccaggattggacgatcgaagcacaaaaatttttatcctgt
gtggcgcggacgggacagaaattcggtatgatgcacataatcaacgtactgaggggaaga
aaaggtgaaagaatcagccaatatcaacatcatttattatctacttatggcatcggtaaa
gataaaactgtggaggagtggaaacgtttaagtcgttcccttgtccagcaaaatatatta
gtagaaactgaagacgattttagaatcttgaaacttaatcaacacagttgggaagtgatg
cggaaacaacgttccgtgtttattgccgtcccccaaaaagctaacggtcaaatcgtggga
gacgacaatcccaatatggtggaaagtgatttattattcgagcgcttgcggcaactgcgg
aaaaaaattgccgatagtcaaggggttcctccctacgttattttccatgattctagtctg
cgtttgatggcccaatcgaaaccacggaatttggggcagtttcgtcaaatttctggagta
gtacacagtaaagtacaacagtatggggatatatttatagcggcaattaatgatttttgt
caggatagtcttccctctactcaattcctcactctccaatactatcaagatgggttgaat
gcggaagaaatcgctcgcaaaagaagcttaaaagtctcaaccatctatgaacatttagct
aaattgctggaggcaggttacgaaattgatattaatcagttagtctctaaaaataaacag
gaatatattcgtttagcgatcaaaaaagtgggcgatcaatccctgaaaactctcaaagaa
aatctgggagataattatagttatgaggaaattaaattagttgttgcttggcaaagacga
ccacggcaatag
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