Microcystis sp. MC19: B5D77_23115
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Entry
B5D77_23115 CDS
T05365
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
miq
Microcystis sp. MC19
Pathway
miq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
miq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B5D77_23115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
miq03400
]
B5D77_23115
Enzymes [BR:
miq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B5D77_23115
DNA repair and recombination proteins [BR:
miq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B5D77_23115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AVQ73791
UniProt:
A0A2P1ULK6
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All DBs
Position
4600966..4604448
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AA seq
1160 aa
AA seq
DB search
MTFASVIRNIEKSPLTAELIQKLEKNGNLTLTGLARLPKGLIGTAFARCQGKNLLIICAN
LEEAARWAAQLEAMTWKGVFFYPTSEACPYERFNRESEMIWGQMQVLSTISHQEAGMAIV
TTEKALQPHLPPREVFEKYSDNFEVGRVIEAKNLDLTLARLGYERVSLVETEGQWSRRGD
IVDIFPVSAELPVRLEFFGDELEKLREFDPATQRSLDSIPNLLLTPTSFAAMIAPSLPPT
VADYLEAEEREKLANGIYPEGIERFLGLAFRQPASLLDYLPENTLIAFDELESCQARSDR
WIEYIGERWQEIEPALPQIHRSFGESLEISAKFPHLYLSEIDDHLSENSLNLSSRPIPTN
PGQFAKLAEILRGKREIYSGIKVNKYATWLISAQPSRTVSLLQEHDCPAQFIPNPLDFGA
IERLIIQNTATALKYSGLAELEGFILPTYRIVVVTDREFFGQHLLNTAGYVRKRRQAASV
QVDVNKLRPLDFVVHKHHGIGQFIKLEKQESTISGIVQGRDYLVIKYADGLLRVPADSVD
NLSRYRHTGNQEPELHKISGKAWEATKARVRKSIKKLAVDLINIYAQRAKKSGFAYPMDN
PWQRELEDSFPYQPTADQLKAIQDVKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKAVT
TGHKQVALLAPTTILTQQHYHTLKERFAPYPINVGLLNRFRTNSEKKDIVQRLKTGELDI
VVGTQLLLSKAVEFKDLGLLVIDEEQRFGVNQKEKIKAFKSNIDVLTLSATPIPRTLYMS
LSGVREMSLITTPPPSRRPIQTHLSSYNSDVIRTAIRNELDRGGQVFYVLPRIEGIEEKA
AAIQGMIPGARIAIGHGRMDESELETTMLAFNNGEADILVCTTIVESGLDIPRVNTIIIE
DAQKFGLAQLYQLRGRVGRSGVQAHAWLLYPAKAELTETARERLKAIQEFTQLGSGYQLA
TRDLEIRGAGNLLGAEQSGQMEAIGFDLYMEMLQEALQEIQGQEIPQVEDTQIDLKLTAF
IPNDYISDPEQKMDVYRAIATANSQKNLGQIAADLVDRYGAIPSPVAQLFKVIELKHLAK
SLGFSRIKPDGKQHIILETPMEEPAWKLLQEHLPQHIQSRFVYSPKQVTVRGLGLVKPPQ
QLDSLLDWLAKCKDGLPTGN
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgcctccgttattcgcaacattgaaaaatcgccattaactgccgaacttatc
caaaaactggagaaaaatggcaatttaaccctaaccggccttgcccgcttaccgaaagga
ttaataggcacagctttcgcccgttgtcaaggaaaaaatcttttaattatctgtgccaat
ctggaagaagcggcacgttgggcggcacaattagaagcgatgacgtggaaaggtgttttc
ttttatcccacctcggaagcttgcccctacgagagatttaatcgggaatccgagatgatt
tggggacagatgcaggtattatcgacaatcagtcatcaagaggctggaatggcgatcgtt
accaccgaaaaggccctgcagccccatttaccccctagagaggttttcgagaaatatagc
gataattttgaggtaggaagggttatagaagccaaaaacctcgatctaaccctagctaga
ttaggatatgaacgggtttcactggtagaaaccgaaggacaatggagtcgtcgcggcgat
atcgttgatattttcccagtttcggcagaattaccggtcaggttagaatttttcggcgat
gaattggaaaaattgcgagaatttgaccctgccacccaaagatcgctcgattctatcccc
aatctgcttcttactcccactagcttcgcggcgatgattgccccttctctccccccgaca
gtggccgattatctggaggccgaagagcgagaaaaattggctaatggcatttatccagag
ggaattgagcgatttttaggcttggccttccgtcaacctgcctctttattggattatctc
cctgaaaatacccttattgcctttgatgaactggaaagctgtcaagctagaagcgatcgc
tggatagaatatattggggaacgctggcaagagatagaaccagctttaccgcaaattcac
cgttcttttggcgaatctttggaaatatcggccaaatttccccatctctacctctcagaa
atagacgatcacctctccgaaaatagccttaatctctccagtcgtccgattcccaccaat
ccggggcaattcgccaaactagcggaaattttacggggaaaaagagagatttatagcggt
attaaagtaaataagtacgctacatggttaatatctgcccaaccctcccgcacagtctcg
ttattacaggaacacgactgtccggcccaatttatccccaatccccttgattttggggcg
atcgagcgattaatcattcaaaacaccgctacagccctaaaatactcaggattagctgaa
ttagaaggttttatcctacccacctatcgcatagtcgtcgttactgatcgagagttcttc
ggacaacatcttctaaatactgctggttacgtccgcaaacgtcggcaagcagcctcggta
caggtggacgtgaacaaactccgtcccctcgattttgtagtacataaacaccatggcatt
gggcagtttatcaaactagaaaagcaggaaagcacaattagcggaatagtgcaaggtcga
gattatctagttattaagtatgccgatggattattgcgggttcctgccgattctgttgat
aatctctcccgttatcgtcatacaggtaatcaagagccagaattacataaaatctctggc
aaagcgtgggaagcgacgaaagctcgcgtcaggaagtcgattaagaagttagcggttgat
ttaatcaatatttacgcccaacgggccaaaaaatcgggttttgcctatcctatggataat
ccctggcagcgggagttagaggattcttttccctaccaacccactgccgatcaattaaaa
gcgatacaggatgtgaaacgggatttagaaagcgatcgcccgatggatcgcttagtctgt
ggggatgtgggttttggtaagacagaagtggcgattcgggctatttttaaagctgtcacc
acgggtcataaacaggtggctttattagcaccaacaacgattttaacccaacaacattat
cacaccctaaaagaacgttttgctccctatcccattaatgtgggtttattaaatcgtttt
cgcaccaattccgagaaaaaagatatcgtccagcgcttgaaaacgggggaattggatata
gtagtgggtactcagttgttattgagtaaagcggtggagtttaaagatttaggattattg
gtaattgatgaagaacagcgttttggggtcaatcaaaaggaaaaaattaaggcttttaaa
agtaatattgatgtgttaaccttgagtgcgacaccgattccccggactctttatatgtcc
ctttctggggtgcgagaaatgagtttaattaccacacctcccccctctcgtcgtcccatt
caaacccacctttctagttataattctgatgtgattagaacggcaattcgcaacgaattg
gatcgggggggacaggttttttatgtattacccagaatcgaggggattgaagaaaaagcg
gcagcaattcaagggatgattcctggtgctagaattgccatcggccacggtcgtatggat
gagtccgaattagagaccaccatgttagcatttaataatggggaagcggatatcttagtc
tgtacgactattgtggagtcggggttagatattcccagagttaacacgattatcattgaa
gatgcccaaaaattcggtttagcgcaactctatcaactgcggggacgggtggggcgatcg
ggagtacaagcgcacgcgtggttactttatccagccaaggcagaactaacagaaaccgct
cgggaaagattaaaggcaattcaagaatttacccagttaggatcggggtatcaattagcg
actagagatctggaaattcgcggcgctggtaacttattgggtgcggaacaatcaggacaa
atggaagcgatcggttttgatctatatatggaaatgttacaggaagctttgcaggaaatt
caaggtcaagaaattccccaagtggaggatacccaaatcgatctgaaattaactgcattt
attcctaacgattatatatccgatccggagcagaaaatggatgtctatcgggcgatcgct
actgccaattctcagaaaaatttaggacaaattgccgccgatttagtcgatagatacggg
gcaattccttcaccggtggcacaattatttaaggtaatcgagttaaaacatctggctaaa
tccctcggtttttcccgcattaaacccgatggaaaacagcatattatcctcgaaactccc
atggaagagccagcgtggaaattattacaagaacacctaccccaacatatacaatcacgc
tttgtttatagtcccaaacaggtgacagttaggggtttaggattggtaaaaccaccacag
cagttagatagtttattggactggttagctaaatgtaaagatggtttaccgacgggcaat
tag
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