Mycobacterium paraintracellulare: OCQ_12970
Help
Entry
OCQ_12970 CDS
T01755
Name
(GenBank) ATP-dependent rna helicase, dead/deah box family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mir
Mycobacterium paraintracellulare
Pathway
mir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCQ_12970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mir03019
]
OCQ_12970
03009 Ribosome biogenesis [BR:
mir03009
]
OCQ_12970
Enzymes [BR:
mir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OCQ_12970
Messenger RNA biogenesis [BR:
mir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OCQ_12970
Ribosome biogenesis [BR:
mir03009
]
Prokaryotic type
rRNA helicases
OCQ_12970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
UvrA_inter
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFC52809
LinkDB
All DBs
Position
1320122..1321825
Genome browser
AA seq
567 aa
AA seq
DB search
MTLSDSSTGAASTTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDVTSTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGS
SYSVQLAGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI
LSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKD
GSIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE
RHLLKAIEKATRQTLTETALPTVEDVNAQRVAKFADSITTALGAPGIDLFRKLVQDYERE
HDTPMADIAAALALQSRDGEEFLMSPEPPPERRERRTERRDRPEKPRSTRPFATYRIAVG
KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTFKRLEQTRISGVL
INLQPDRSSAKARGGRDGGKPRRKHGE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaccctctcagacagctcgaccggggctgcctctacgacgtttgccgacctgcagatc
cacccctcggtgctgcgggcggttgccgacgtcggctacgaatcacccaccggtatccag
gccgcgacgatcccggcgctgatggcgggctccgacgtggtcgggctggcgcagaccggc
accggcaagaccgccgcgttcgcgatcccgatcctgtccaaaatcgacgtcaccagcacc
gccacccaagccctggtgctcgccccgacccgggagctggccctgcaggtcgccgaggcg
ttcagccggtacggagcccacctgcccaagatcaacgtgctgccgatctacggcggctcg
tcctacagcgtgcagctggccgggctgcggcgcggggcgcacgtggtggtcggcacgccc
ggccgggtgatcgaccacctcgaacgggggacgctggacctgtcccacgtcgactacctg
gtgctcgacgaggccgacgagatgctcaccatgggcttcgccgaagaggtcgatcgcatc
ctgtcggagaccccggaatacaagcaggtggcactgttctccgcgaccatgccgcccgcg
atccgcaagctcaccaccaagtacctgcacgacccgctcgaggtcagcaccaaggcgaaa
accgcgaccgccgagaacatctcgcagcgctacatccaggtcgccggtccccgcaagatg
gacgcgctgacccgggtgctcgaggtcgagccgttcgaggcgatgatcgtcttcgtcaga
accaaacaggccaccgaggaagtcgccgaaaagctaagggcgcgaggtttctccgccgcg
gccatcaacggggacatcccgcagggccagcgcgagcggaccgtcgccgccttaaaggac
ggcagcatcgacatcctggtcgccaccgacgtggccgcacgcggactcgacgtggagcgg
atctcgcacgtgctcaactacgacatcccgcatgacaccgagtcgtacgtgcaccggatc
gggcgcaccggcagggccggacgttcgggcaccgcgctgctgttcgtttcgccgcgagag
cgccacctgctcaaggcgatcgaaaaggccacgcggcaaacgctcaccgaaaccgccttg
cccaccgtcgaggacgtcaacgcgcaacgggtggccaagttcgccgattcgatcaccacc
gcgctcggggcccccggcatcgacctgttccgcaagctggtccaggactacgaacgcgaa
cacgacaccccgatggccgatatcgccgccgcgctggccctgcaatcccgcgacggcgag
gaattcctgatgtcgcccgaacctccgcccgagcgtcgcgagcggcgcaccgagcgccgc
gaccgccccgaaaagccaaggtctacacggccgttcgccacgtatcgcatcgcggtgggc
aagcgccacaagatcggtccgggcgccatcgtgggcgccatcgccaacgagggagggctg
catcgcagcgacttcggccacatcgcgatcggcccggacttctcgttggtggaactgccg
gccaagttgcccaagtcgacgttcaaaaggcttgagcagacccgcatctcgggggtgttg
atcaaccttcagccggacaggtcctcagccaaggcccgcggcggccgggacggcgggaaa
ccgcgcaggaaacacggcgaatga
DBGET
integrated database retrieval system
