KEGG   Micromonas commoda: MICPUN_100884
Entry
MICPUN_100884     CDS       T02695                                 
Symbol
LSM
Name
(RefSeq) like-sm protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
mis  Micromonas commoda
Pathway
mis03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MICPUN_100884 (LSM)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mis03019]
    MICPUN_100884 (LSM)
Messenger RNA biogenesis [BR:mis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MICPUN_100884 (LSM)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     MICPUN_100884 (LSM)
SSDB
Motif
Pfam: LSM Hfq Bac_small_YrzI
Other DBs
NCBI-GeneID: 8244068
NCBI-ProteinID: XP_002503131
JGI: MicpuN3_100884
UniProt: C1E7T5
LinkDB
Position
6:complement(247685..248068)
AA seq 127 aa
MSGGAVDAWQVSAVASLVEELDKKILVVLRDGSKIIGFLRSFDQFANIVLENACERIIVG
TSFSDIPLGLYIVRGENVVLMGDIDETIETEGLTEVSNEEIKREREAEKAADKFKGEMLK
RMDFLED
NT seq 384 nt   +upstreamnt  +downstreamnt
atgtccggtggcgccgttgacgcctggcaagtctccgcggtggcgtcgctcgtggaggag
ctcgacaagaagatcctcgtggtgctgcgggacggctcgaagatcatcggcttcctgcgc
agcttcgatcagttcgcgaacatcgtgctggagaacgcgtgcgagcgtatcatcgtggga
acatcattcagcgatatccccctcggtctgtacatcgtgaggggcgagaacgtggtgctc
atgggggacatcgacgagaccatcgagacggaggggctcaccgaggtgagcaacgaggag
atcaagcgcgagagggaggcggagaaggcggccgacaagttcaagggcgagatgctcaag
cgcatggatttccttgaggactga

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