Micromonas commoda: MICPUN_100884
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Entry
MICPUN_100884 CDS
T02695
Symbol
LSM
Name
(RefSeq) like-sm protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_100884 (LSM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_100884 (LSM)
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MICPUN_100884 (LSM)
mRNA degradation factors
5'-3' decay
Lsm complex
MICPUN_100884 (LSM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Bac_small_YrzI
Motif
Other DBs
NCBI-GeneID:
8244068
NCBI-ProteinID:
XP_002503131
JGI:
MicpuN3_100884
UniProt:
C1E7T5
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All DBs
Position
6:complement(247685..248068)
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AA seq
127 aa
AA seq
DB search
MSGGAVDAWQVSAVASLVEELDKKILVVLRDGSKIIGFLRSFDQFANIVLENACERIIVG
TSFSDIPLGLYIVRGENVVLMGDIDETIETEGLTEVSNEEIKREREAEKAADKFKGEMLK
RMDFLED
NT seq
384 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtggcgccgttgacgcctggcaagtctccgcggtggcgtcgctcgtggaggag
ctcgacaagaagatcctcgtggtgctgcgggacggctcgaagatcatcggcttcctgcgc
agcttcgatcagttcgcgaacatcgtgctggagaacgcgtgcgagcgtatcatcgtggga
acatcattcagcgatatccccctcggtctgtacatcgtgaggggcgagaacgtggtgctc
atgggggacatcgacgagaccatcgagacggaggggctcaccgaggtgagcaacgaggag
atcaagcgcgagagggaggcggagaaggcggccgacaagttcaagggcgagatgctcaag
cgcatggatttccttgaggactga
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integrated database retrieval system