Micromonas commoda: MICPUN_105535
Help
Entry
MICPUN_105535 CDS
T02695
Name
(RefSeq) transcription elongation-nucleosome displacement protein
KO
K11292
transcription elongation factor SPT6
Organism
mis
Micromonas commoda
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mis03021
]
MICPUN_105535
03036 Chromosome and associated proteins [BR:
mis03036
]
MICPUN_105535
Transcription machinery [BR:
mis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
MICPUN_105535
Chromosome and associated proteins [BR:
mis03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
MICPUN_105535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
Spt6_S1
Tex_central_region
YqgF
HTH_44
SPT6_acidic
HHH_9
S1
S1_RRP5
OB_RRP5_4th
HHH_3
Motif
Other DBs
NCBI-GeneID:
8243652
NCBI-ProteinID:
XP_002501995
JGI:
MicpuN3_105535
UniProt:
C1E5G2
LinkDB
All DBs
Position
5:join(73101..73108,73123..77815)
Genome browser
AA seq
1566 aa
AA seq
DB search
MARRTRTAVIEEDDDDDDDDSDDEAAKKRKRREEAFELDEEDYDLLEDNQVTGFKRKLKK
KRLQKASDAEKAKPKTADDLEKDLFGESDDEEPDKAEAAEELKDLQDDKEVFKAGAAPQG
DFVASDDDSEDEFADFIEREEGQPKRRKIKSHITGVRSEQLQDAVDIFGDLGELNELFAM
RHRGGAEEEDEYEDDDEDDENDEDDEETDADALAGEGDEALDAEPKPKPKAKKAKKAKKK
KSRGGVSGGWQSRFEPSIVKEQMLTAEDDEIRATDWPERMQLNPRYGGKPEDPQAEAKWI
LDRLMGLDSVRDMPTYGGDLLLTGWADDVDLEQHRAREHLVRTQNQLPKGEVEAVTAAIA
ALLKAVHEDGLEVAYVAQNMRDVVEPLMRGRRDDSRPPPRDANGAVLERRVHRRDVIHEI
MEWDRRFSRLAQRRKEMMKKIDAAAEILERDAAPEQDLSLLSSLANECEDAPTEEVLSDV
EACLTLRFHEQLTEVEQSGKADGSLGLTRQLRPLNRSQYAHHCKKGIRDLLPTYGADPRD
LGASLGSYRRTKVSQAVPDMSPEAVAEVYVGDETGYADVSSVIRSLVHVAAAEIAAEPAV
RAWLRRAIRRKACVWTQPTPAGTEAMDPFHPLAEIKRLQGKPACEFGGAEFGAVLKAHRD
GLIKLRIALPDVVIQELTNEMESAYVIEEVSEMADAWNKLRRDALAGAKAALLPALTREA
AVALERDAASEIRRLCGESLWRRVALAPWKPDVRDHDQFGADDEVEVRVLAAVWGPGDPP
TTFAMLDADGELVDFLQCPNIAVGGKFGAATARRQADMDRLIQFMIEHRPHVCVVATAPG
QLHACRNLKENIALVIGKILEDHARAIPEEVNTIQLHFIDDTVPALAASCAAMRTEFIEH
STEIRHAVALGRYIRNSAAVVAALAAGGEARALNLGPLQDALTPEEKMGIFERGLIDVIN
QCGVDVNAAVAHPWQQYQLHYVAGLGPRKAGSLVAAVRGSSGGALESRDQLVSELGALGP
CVYKNAATTLRVIDDDVLDRTRIHPERYDHTLEIIANAFDYDFENLKSASASVKRKTLER
AMDPDNWDKLAVLDLRAYAEYLNGQGSGWLLSALRELRMELRDPFGEIRMSWQPLSTWEE
FSLLTGETRESLSPGKIVHCTVKRLVPPRREEGTEGHVVVQLESGVMGHIAKSDLSDRPV
DRLEHKVAVGQVIAARIINANYEENTVYLKCKGSALSAEESKRIEFQTWGNKLYYSCEPL
DGEVAKPTKPKKRKDAASRQAFISRNIDHPLFQNISAQQAQAYLDNKDIGDIVLRPSSKG
VTNLSITMKIFDSMVQHFDIKEGKKPGVGHTANLALGTPLTLEGTDYDDLDEVYARFVEP
LVSSLKKLIKHRKFLRGTRREVDQRLKAELARYPDTRPYALSVSHEHSGFFCLSAILSRS
GNVRHEYLSVKPGGFRFRQREFGDVDRLLNFFKQRPVPDRDQVRQQQQQQPPPMPQQPPP
QQYQHHHQQQWQQQQQWQQPQQAYGGYPPQGMPPMPQGGYPQAAYQNYPPQQGGYPPQQQ
QWQGGY
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcgcactcggaccgcggtcatcgaggaagacgacgacgacgacgacgacgac
tccgacgacgaggcggccaagaagcgaaagaggcgcgaggaggcgttcgagctcgacgag
gaagattacgatctcctggaggacaaccaggtcaccggcttcaagcgcaagctcaagaag
aagcggctgcagaaggcgtcggatgccgagaaagctaagccaaagaccgccgatgacctc
gagaaggacctcttcggcgagtccgacgacgaggagcccgacaaggcggaggcggctgag
gagctgaaagatctccaggacgacaaggaggtcttcaaagcgggcgcggcgccccagggg
gacttcgtcgcgtccgacgatgactccgaggacgagttcgcggacttcatcgagcgcgag
gagggccagcccaagcgtcgcaagatcaagtcccacatcaccggcgtcaggtctgagcag
ctgcaggacgcggtggacatcttcggagatctcggcgagttgaacgagctcttcgccatg
aggcatcgaggcggcgccgaggaggaggacgaatacgaggacgatgacgaggatgacgag
aatgacgaggatgacgaggagacggacgccgatgcgctcgctggggagggcgacgaggcg
ctcgacgccgagccaaaacccaaacccaaggcgaagaaggcgaagaaggccaagaagaag
aagagccgcggcggcgtctccggcggctggcagtctcgattcgagccgtccatcgtcaag
gagcagatgctcaccgcggaggacgacgaaattcgcgccaccgactggcccgagcgcatg
cagctgaacccgcgatacgggggaaagcccgaggatccgcaggcggaggctaagtggatc
ctcgaccggctcatgggcttggactcggttcgagacatgccaacctacggcggcgacctc
cttctcaccggctgggccgacgacgtggacctcgagcagcacagggctcgcgaacacctc
gtccggacgcagaaccagctccccaagggtgaagtcgaggctgtcaccgcggcgattgcg
gcgctcctgaaggcggttcacgaggacggcctcgaggttgcttacgtcgcgcagaacatg
cgggacgtggtcgaacccctgatgcggggccgccgcgacgactccaggccgccgccgcgc
gacgccaacggcgcggttctcgagcgcagggtgcacaggcgcgacgtcatccacgagatt
atggagtgggacaggcgattctctcgtctcgcgcagcgtcgcaaggagatgatgaagaag
atcgacgcggcggcggagatcctcgagcgcgacgcagcgcccgagcaagatctctccctt
ctctccagcttggccaacgagtgcgaggatgcgcccaccgaggaggttctcagcgacgtc
gaggcttgcctcacgcttcgcttccacgagcagctcaccgaggttgagcagagcggcaag
gccgacgggtccctgggcctcacccgccagctccgacccctcaaccgctcgcagtacgct
caccactgcaagaagggcatccgcgacctcctccccacctacggagccgaccccagggac
ctgggcgcgtcgctcgggtcgtaccgccgcaccaaggtgtcgcaggcggttcccgacatg
agccccgaggctgtcgccgaggtttacgtgggcgacgagacgggatacgcggacgtatca
tccgtcatccgctccctcgtacacgtcgccgccgcggagatcgccgccgagcccgcggtc
agggcgtggctccgacgggccatccgccgcaaggcttgcgtgtggacccaacccacgccg
gcgggaaccgaggcgatggacccgttccacccgctcgccgagatcaagcgcctgcagggt
aaacccgcgtgcgagttcggtggagccgagttcggcgcggtgctcaaggcgcaccgcgac
ggactgatcaagctccgcatcgcgctccccgacgtggtcatccaggagctcaccaacgag
atggagtcggcgtacgtcatcgaggaggtctcggagatggccgacgcctggaacaagctg
aggcgcgacgcgctcgccggcgccaaggcggcgctgctccccgcgctgacccgcgaggct
gccgtggctctcgagcgcgacgccgcgtctgagattcgcaggctctgcggtgagtcgctg
tggcgtcgcgtggcgctcgcgccgtggaagccggacgttcgagaccacgaccagttcggc
gcggacgacgaggtggaggtgagggtgttggccgcggtgtggggacccggcgatcccccc
acgacgttcgccatgctcgacgccgacggcgagctggtggactttttgcagtgccccaac
attgccgtcggcggtaagtttggcgcggctaccgccaggaggcaggcggacatggacagg
ctgatccagttcatgatcgagcaccgcccgcacgtctgcgtcgtggccaccgcgcccggt
cagctccacgcgtgccgcaacctcaaggagaacatcgcgctggtcattggcaagattctt
gaggatcacgcgcgagccatcccggaagaggttaacaccattcagctgcacttcatcgac
gataccgtcccggcgctcgccgcgagctgcgccgccatgcgcaccgaattcatcgagcac
tcgaccgagattcgccacgcggtcgcccttggtcggtacattcgtaacagcgccgcggtt
gtcgccgcgctcgccgcgggtggcgaggccagggccctgaacctgggcccgctccaggac
gccctcaccccggaggagaagatgggcatcttcgagcgcggcttgatcgacgtcatcaac
cagtgcggcgtggacgtcaacgccgccgtggcccacccctggcagcagtaccagctccac
tacgtcgccggtttgggaccgagaaaggcggggtcgctcgtcgccgccgtgcgaggatcc
agcggcggcgcgctcgagtcccgcgaccagctcgtctccgagctcggcgcgttgggtccg
tgcgtttataaaaacgccgcgacgaccctccgcgtcatcgacgacgacgtcctcgaccgc
acgcggatccaccccgagcgatacgatcacaccctcgagatcatcgccaacgcgtttgat
tacgactttgagaatctcaagagcgcgtccgcgtccgtgaagaggaagacgctggagcgc
gccatggacccggataactgggataaactcgcggtgctcgacctgagggcgtacgcggag
tacctcaacggccagggttcggggtggctgctttcggcgctgagggagttgcggatggag
cttcgcgatccctttggcgagattcgtatgtcgtggcagccgctcagcacctgggaggag
ttctcgctgctcacgggcgagacgcgcgagtcgctatccccgggtaagattgtgcactgc
acggtcaagaggctggtgccgccccggcgcgaggagggcaccgagggtcacgtcgtggtg
cagctcgagagcggcgtcatgggccacatcgcaaagtctgacctctcggaccgcccggtg
gaccggctggagcacaaggttgcggtgggccaggtcatcgcggctcggatcatcaacgcc
aactacgaggagaacacggtgtacctcaagtgcaagggtagcgcgctatccgcggaggag
tcgaagaggatcgagttccagacgtggggcaacaagctgtattactcgtgcgagccgctc
gacggcgaggtggccaagcccaccaaacccaagaaacggaaggatgccgcgtccaggcag
gcgttcatctcgcgcaacatcgatcacccgctgttccagaacatcagcgcgcagcaggcg
caggcgtatctcgataacaaggacatcggcgacatcgtcctgcgcccgtcttccaagggg
gtcaccaacctgtccatcacgatgaagattttcgacagcatggtgcagcacttcgacatc
aaggagggcaagaagcccggcgtgggacacaccgccaacctggcgttgggcacaccgctc
acccttgaggggaccgattacgacgatctggacgaggtgtacgcccgatttgttgagccg
cttgtcagttccctcaagaagctgatcaagcatcgcaagtttttgcggggcacccgaagg
gaggttgaccagcgcctcaaggctgagctggcgaggtaccccgacacccgcccgtacgcg
ctatcggtgtcgcacgagcacagcggtttcttctgcctctccgcgatcctcagccgcagt
ggcaacgtcaggcacgagtacctctccgtcaagcccggcggctttaggttccggcagcgc
gagtttggcgacgtggaccgtctcctcaactttttcaagcagaggccggtgcccgacagg
gaccaggtgaggcagcagcagcagcagcagccgccgccgatgccgcagcagcctccgccg
cagcagtatcaacaccaccaccagcagcagtggcagcaacagcagcagtggcagcagccg
cagcaggcgtacggcggctatcctcctcagggaatgccgccgatgccgcagggaggctac
cctcaggctgcgtaccagaactaccctccgcagcagggcggataccctccgcagcagcag
cagtggcagggtgggtactga
DBGET
integrated database retrieval system
