Micromonas commoda: MICPUN_109373
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Entry
MICPUN_109373 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mis
Micromonas commoda
Pathway
mis03013
Nucleocytoplasmic transport
mis03015
mRNA surveillance pathway
mis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MICPUN_109373
09122 Translation
03013 Nucleocytoplasmic transport
MICPUN_109373
03015 mRNA surveillance pathway
MICPUN_109373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_109373
03041 Spliceosome [BR:
mis03041
]
MICPUN_109373
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MICPUN_109373
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
MICPUN_109373
Spliceosome [BR:
mis03041
]
Complex C
Other components
EJC/TREX
MICPUN_109373
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
MICPUN_109373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
GerA
Dark_CARD
RES
Motif
Other DBs
NCBI-GeneID:
8248688
NCBI-ProteinID:
XP_002505759
JGI:
MicpuN3_109373
UniProt:
C1EGG1
LinkDB
All DBs
Position
13:complement(join(534480..535549,535761..535971))
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AA seq
426 aa
AA seq
DB search
MADDKPVEEDEELLDYEEEEVAADEGAGAKSGEAVKKGYVGIHSTGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLAVLQQLEPVPGEVGALILC
HTRELAYQIKHEFERFSAYLPAVNVAVIFGGVNIKQQKAELKEKPPSIIVATPGRCKALA
KDGDISLKQCGHFILDECDKMLEQLDMRADVQEIFKMTPHDKQVMMFSATLSKEIRPVIK
KFMNDPMEIYVDDETKLTLHGLVQHYIKLTEAEKNRKLNDLLDALMFNQVVIFVKSVQRC
TYLDKLLTECNFPSIAIHRGMSQEERLARYKSFKEGNKRILVATDLVARGIDIERVNIVI
NYDMPDGADTYLHRVGRAGRFGTKGLAITFLSSDEDTAVLDAVHARFEVEIKELPEQIDT
STYMPA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgacaagcccgtcgaagaggacgaggagctcctcgactacgaggaggaggag
gtcgcggccgacgaaggcgcgggagccaagtccggcgaggctgtgaagaagggatacgtc
gggatccactcgacgggcttccgcgatttcctcctgaagcccgagctgctccgcgcgatc
gtcgactgcggcttcgagcatccctccgaggttcagcacgagtgcatcccccaggcgatc
ctgggcatggacgtcatctgccaggccaagtccggcatgggcaagaccgcggtgttcgtg
ctcgcggtcctccagcagctcgagcccgtcccgggcgaggttggcgcgctgatcctctgc
cacacgcgcgagctggcgtaccagatcaagcacgagttcgagcgcttcagcgcgtacctc
cccgcggtgaacgtcgccgtcatcttcggcggcgtcaacatcaagcagcagaaggcggag
ctcaaggagaagcccccgagcatcatcgtcgccacccccggccgctgcaaggcgctggcc
aaggacggcgacatctccctcaagcagtgcggccacttcatcctcgacgagtgcgataag
atgctcgagcagctcgacatgcgcgcggacgtccaggagatcttcaagatgaccccgcac
gacaagcaggtcatgatgttctccgccacgctgtccaaggagattcgccccgtgatcaaa
aagtttatgaacgaccctatggagatttacgtcgacgacgagaccaagctcaccctccac
ggcctcgtccagcactacatcaagctgaccgaggcggagaagaaccgcaaactcaatgac
ctcctcgacgcgctcatgttcaaccaggtggtcatcttcgtcaagtccgtgcagcgctgc
acgtacctcgacaagctcctcaccgagtgcaactttccgtccatcgccatccaccgcggc
atgtcgcaggaggagcgcctggcgcggtacaaatcgttcaaggagggtaacaagcgcatc
ctcgtcgcgaccgacctcgtcgcgcgcggcatcgacatcgagcgcgtcaacatcgtcatc
aactacgacatgcccgacggagcagacacctacctccatcgcgtgggccgagccggtcga
ttcggtaccaagggcctggcgatcaccttcctctcctccgacgaggacaccgcggtcctc
gacgccgtgcacgcgaggttcgaggtggagatcaaggagctgcccgagcagatcgatacc
tcaacctacatgcccgcgtga
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