KEGG   Micromonas commoda: MICPUN_50350
Entry
MICPUN_50350      CDS       T02695                                 
Symbol
CUPC19
Name
(RefSeq) hypothetical protein
  KO
K03138  transcription initiation factor TFIIF subunit alpha
Organism
mis  Micromonas commoda
Pathway
mis03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    MICPUN_50350 (CUPC19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mis03021]
    MICPUN_50350 (CUPC19)
Transcription machinery [BR:mis03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIF
     MICPUN_50350 (CUPC19)
SSDB
Motif
Pfam: TFIIF_alpha
Other DBs
NCBI-GeneID: 8243517
NCBI-ProteinID: XP_002502230
JGI: MicpuN3_50350
UniProt: C1E6S9
LinkDB
Position
5:1030836..1032461
AA seq 541 aa
MTTVHVKFPSEATHATVTVPSPATPAGVCAAVLAARPDLGKMLDAKGQYAGFELSLVDPK
TGRPMNPDDADAVPHDAKMELVLSKGYAVRAFAPVRKYVVGRFSGERPPKFKSGRATAVE
WQLCRQRSDVTGREPNLQLVSESKKGGRVQFNGARESAGLGNFFLLMMQASTTDVCAIPM
EQWYNFRPVANRRVMSLEEAEERLEARGRHTTSTSQWLEKVTKGAMDDDDDGLSDSDDVD
RFKTQAGDSSDDDDENDGKKKKKKKKGTVIKQEPEEEDVKAGNDVGDAPGARGIVKAEGD
DWEHDAGASDDEVAGEGMGDEIEMVDADDAKPPPKTGVGPNDDDEDEDEDLDAEGAKLKR
LLGREEEAATAAELGGFSDNDDSDSEFVDPDQEELHPFLLQQRNKAEQAQIQKAQAAAQA
AQRAAQAAAQAAAAAVVVKPEPVAAGVKRARDDDDANATQSAPAAKAIKTEAGAGAAMRP
IEAALRAILRGASKVTTKDVTKQLRKKGLLGTDEDKEELKSTIGRVAKINKEGAASYVVL
K
NT seq 1626 nt   +upstreamnt  +downstreamnt
atgacgacggtgcacgtcaagttcccgagcgaggcgacgcacgcgacggtcaccgtgccg
tcgcccgcgacgcccgcgggcgtctgtgccgcggtcctcgccgcgcgccccgatctcggc
aagatgctcgacgccaaggggcagtacgccgggttcgagctgtcgctcgtggacccgaag
accgggcgcccgatgaaccccgacgacgccgacgccgtcccgcacgacgcgaagatggag
ctggtgctgagcaaggggtacgcggtgcgcgcgttcgcgcccgtgcgcaagtacgtcgtc
gggcggttcagcggcgagcggcccccaaagttcaagtctggcagggcgaccgcggtggag
tggcagctctgccgtcagaggagcgacgtgacagggcgcgagccgaacctccagctcgtc
agcgagagcaagaaaggcggtcgggtgcagttcaacggcgcgcgcgagagcgccggcctc
ggcaacttcttcctcctcatgatgcaggcgagcaccacggacgtgtgcgcaatcccgatg
gagcagtggtacaactttcggccggtggcgaaccgacgggtgatgtccttggaggaagcc
gaggagcgtctggaggctaggggcaggcacaccacgtccacgtcgcagtggctcgagaag
gtgacgaagggcgcgatggacgacgacgacgacgggctgtccgactcggacgacgtcgac
cggttcaagacgcaagcgggtgactcgagcgacgacgacgacgaaaacgacgggaaaaag
aagaagaagaagaagaagggcacggtgatcaagcaggaacccgaggaggaggacgtgaag
gcgggtaacgacgtgggcgacgcccccggagcgcgcggcatcgtcaaggctgagggcgac
gactgggagcacgacgcgggcgcgtcggatgatgaagtagccggcgagggcatgggagac
gagatcgagatggtggacgcggatgacgcaaagccgccgcccaaaaccggggttggtccg
aacgacgacgacgaagacgaagacgaagatctcgacgcggagggtgcgaaactcaagcgg
ctgctcggcagggaggaggaggcggcgacggcggcggagctgggcggcttctccgacaac
gacgactccgactcggaattcgtcgaccccgaccaagaagagcttcacccgtttttgctg
cagcagaggaacaaggctgagcaggcgcagatacagaaggcgcaggcggcggcgcaggcg
gcgcagcgcgcggcacaggcggcggcccaggcggcggcggcagcggtggtggtcaagccc
gagcccgtggcggctggcgtgaagcgcgcgagggacgacgacgacgcaaacgcgactcaa
tccgcgcccgccgccaaggcgatcaagactgaggctggcgcgggggcggcgatgcgcccg
atcgaggctgcgctgcgcgccatcctccgcggcgcgagtaaggtcaccacgaaggacgtg
acgaagcagctgcgcaagaagggcctgctcggcacggacgaggacaaggaggagctcaag
tcgacaatcgggcgggtggccaagatcaacaaagagggcgccgcgagctacgtcgtgctc
aagtga

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