Micromonas commoda: MICPUN_51830
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Entry
MICPUN_51830 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mis
Micromonas commoda
Pathway
mis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MICPUN_51830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mis03041
]
MICPUN_51830
03009 Ribosome biogenesis [BR:
mis03009
]
MICPUN_51830
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MICPUN_51830
Spliceosome [BR:
mis03041
]
Complex A
U2 snRNP components
U2 related factors
MICPUN_51830
Complex B
MICPUN_51830
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
MICPUN_51830
Ribosome biogenesis [BR:
mis03009
]
Eukaryotic type
90S particles
Helicases
MICPUN_51830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
Cas3-like_C_2
DEAD
AAA_22
ResIII
Motif
Other DBs
NCBI-GeneID:
8250249
NCBI-ProteinID:
XP_002507713
JGI:
MicpuN3_51830
UniProt:
C1FEJ8
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All DBs
Position
1:complement(join(1689656..1690456,1690599..1691501))
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AA seq
567 aa
AA seq
DB search
MNIYWTVPTFRMLLREAMTDPLLNRYGVIIIDEAHERTLATDVLFGLLKEVLTKRTDLKV
VVMSATLEAEKFQNYFLEAPLMRVPGRLHPVEIFYTQNPERDYLEAAIRTAVQIHVCEPP
GDVLIFLTGEEEIEDACIKVRREIGSMGDRVGVVKVVPLYASLPPQQQQRIFDDAPPPRD
GPSGVPGRKIVISTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISRASAH
QRAGRAGRTRPGKCFRLYTEGSFKKDLQEQTYPEILRSNLGSVVLQLKKLGIDDLVHFDF
MDPPAPETLMRALELLNYLGALDDDGNLTQIGSVMSDFPLDPQLAKMVCASPQFRCSNEI
FTITSMLSVPNPFIRPRDQQSEADEAKSRFSHIDGDHLTLLNAYHAFKQNNEDSQWCYNN
YINYRAMKSADSVRSQLVRIASRFNMSLMSTDFTSRDYYLNIRRAILSGYFMQVAHLERQ
GSYLTVKDNQMVSLHPSTCLDHKPEWVMYNEFVLTTKNYIRICTEAKGDWLVEVAPHYYD
LTNFPECEAKRVLERICERSKTNYKRT
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaatatatattggaccgtccctacgtttaggatgcttctccgcgaggctatgacagac
ccattgctaaaccgatacggcgtcataatcatcgacgaggcgcatgaacgaacgctggcg
accgatgtgctgttcggtcttctgaaggaagtcctcactaagcggaccgatctcaaggtt
gtggtcatgtcagccacactagaggctgaaaaatttcagaattatttcctagaggcaccc
ttaatgcgagtgccgggacgactgcaccctgtggaaattttttacactcaaaaccctgaa
cgtgactacctcgaagctgcgattcgcacagctgttcaaatacatgtgtgcgaacctcca
ggtgatgtgctgatcttcctcacaggtgaagaagaaattgaagatgcctgcataaaagtg
aggcgtgaaatcgggagtatgggcgaccgcgtaggagtcgtgaaagtggttccgctgtat
gccagtttgccgccccaacagcaacagcgtatttttgatgatgcgcctccacctcgtgac
ggcccatcgggtgttccaggccggaaaattgtcatctctacaaatattgccgagacgtcg
ctcactattgacggaattgtgtatgtcatagaccctggcttcgcgaaacagaaggtctat
aatccgcgaatcagggtcgaatctcttcttgtatcaccgataagccgtgcctctgcgcac
cagcgcgcagggcgagctggtcgaacgcgtcctgggaaatgtttccgtctttacacagaa
ggatcgttcaaaaaagatttgcaagagcaaacctacccagagattcttcgctcgaacctt
ggttctgtcgtgctgcaactcaagaagcttggcatagacgacctcgtgcactttgacttt
atggaccctcctgctccagagaccttgatgcgtgcactcgaacttctaaactaccttggc
gcgttggacgacgacggtaatctgacacagatcggatcagtcatgagtgatttccctctt
gaccctcaactggcaaagatggtctgcgcctctccgcagttcagatgcagcaacgaaatt
tttacaataacgtctatgctttcagtgccaaatccattcatccgcccgcgagatcaacag
agcgaggccgatgaagcaaagtcccgatttagtcacatcgatggagaccatctgacactg
ctcaatgcatatcatgctttcaagcaaaataacgaagattcgcagtggtgctataataat
tacataaactaccgggctatgaagtctgcagacagcgttcgaagtcaactggtccgcatc
gcatctcgctttaacatgtcactcatgtctacggatttcacaagtagagactattacttg
aatatccgcagagccatactatcgggctacttcatgcaggtggcacatctagagcggcaa
ggatcgtacttgaccgtcaaagacaatcagatggtctcacttcacccttcgacgtgctta
gatcacaagcctgaatgggtaatgtacaacgagtttgttttgacgacaaaaaactatatt
cgcatttgtaccgaggcgaagggagattggctggttgaggttgccccgcactactacgac
ttgacgaatttcccagagtgtgaagcaaaaagggtgttggagcgaatatgtgaacgatca
aagaccaattataaaaggacttga
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