Micromonas commoda: MICPUN_55105
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Entry
MICPUN_55105 CDS
T02695
Name
(RefSeq) predicted protein
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
mis
Micromonas commoda
Pathway
mis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MICPUN_55105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_55105
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
MICPUN_55105
U7-dependent histone pre-mRNA processing factors
MICPUN_55105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
8250477
NCBI-ProteinID:
XP_002507150
JGI:
MicpuN3_55105
UniProt:
C1FDL7
LinkDB
All DBs
Position
1:join(700998..701055,701187..703555)
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AA seq
808 aa
AA seq
DB search
MIEHGTRIKFSPLYGVQGIGEDPFCYVLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEV
DAVLISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSRNANEDFRVFT
LDDIDTAFSAFVPVRYAQRSALVGHGAGITITPYAAGHMLGGALWKVHKETDDVVYAVNF
NHRREKHLNGTVLESIKRPAVLITDASNARRLPPSKTRENDLIEAILRTVRQDGNVLIPI
DPAGRVLELLLVLEERWSQKQLAAYQLVLLTKVAYNTLEFARSHLEWMGEHVGQYFDRER
HNAFNTRHLKLCHSIDEFRALPQGPKVVLASFGSLDAGASRHIFVEWAPDPRNLIVFTDR
LQPGSLSREVCRLSQLPPGARLPLRISLSQRLKLVGDELLEWQGKEISRSQALVPIKSST
KYRVLREPKPVIESCKPNLDTQCTTMHSQASHRGGRCYVLDGINQVNNANVAIFDDESWY
PNVLDFGETITSETFEGYVQIGLQNDHRSGDRIEERPGEFGHTSDPGRVYPDTQFMGLED
SPTKILTETHDVYLRAAVHICDFEGNSDGHSIQTILTHLEPRRVILVRGNPSDTDFLRMQ
LQKSLLRAEIHAPKQSQMVECISENTTFRLELSQDLLSHTHMRDVAGYQVGWVEGNVLIS
RGGGDPAATLVPAKSGMICEAQRTGLQPNTGASQTATRETRTQDARVGLDFSREIDEQST
ASELFLDELVVKKPAALVGSLKLSDSRLALAAAGCATEFRGGALMCTGDKVRVRKTVNVM
GAENLLLEGNLCDTFFSVRSTLYHHHQV
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacatggaactagaatcaagttctcaccgctatatggagttcaaggtattggc
gaggatcctttctgctacgtccttgacttggacggctttaaaatcctacttgattgcggg
tggaatgatagtttcgacgtgaacttgctagagcctcttgcaaaagttgcagcggaggta
gatgccgttctcatctcccatcccgacactgaacatttgggcgcgttaccgtatgcattt
ggcaagcttggcatgcgttgcaaggtatacgcaacgctccctgtgcacaaaatgggactt
atgttcatgtatgatcactttctttcgcgcaacgcgaatgaagatttcagagtctttaca
cttgatgacatagatactgccttcagcgcttttgtaccagtgcgatacgcgcaacgatca
gctctagtcggtcacggggccggcattacaatcaccccatatgcagctggacacatgctg
gggggtgcgctttggaaggtgcacaaagaaacagacgatgttgtttacgctgttaacttc
aaccatagaagggagaaacacttgaatggaaccgttctagaatcaatcaaacgaccggca
gtgctcattactgatgcatccaatgcacgacgacttcctccatccaaaacgcgagaaaat
gacttgattgaagccatattgcgcactgtgcggcaagatggtaacgtgctcatcccaatt
gatcctgccggtcgtgtcctggaacttttactggttttagaagaaagatggtcgcaaaag
caacttgcagcctaccagctcgtattgctcactaaagtggcgtacaatactcttgagttc
gcccgtagtcatcttgagtggatgggtgagcatgttggtcaatattttgacagggagcgc
cacaacgcctttaacacccgtcacttaaaactatgccactctattgatgaattccgcgcg
ttgcctcaaggacccaaagttgtcctcgcgtcatttggttccctcgatgctggggcatcc
cgacatatattcgtggagtgggccccagaccctcgaaatttgatagttttcaccgataga
ttgcaaccaggctcactttcacgcgaggtatgcagattatcacagctgccacccggtgca
cgattacctctgaggatctctctgtcgcaaagattaaaactcgttggtgacgagttactt
gaatggcaggggaaggaaatttcaagatcgcaagcattggtcccgattaaaagttcaaca
aagtatagggttttgagggaacccaaaccagtgattgaatcatgtaaacctaatttggat
actcaatgtacaacaatgcattctcaagcctcgcatcgcggtggtcgatgctacgtgctt
gatggcattaaccaagtcaacaatgcaaatgttgcgatctttgacgatgaatcatggtat
ccaaatgtgctagactttggagagacaatcacatctgaaacctttgaagggtatgtccaa
atcggattgcaaaacgaccaccgcagcggcgatcgcatcgaagaaagacctggagaattc
ggtcatacctcagatcctggaagggtttaccccgatacacaatttatgggactcgaagat
agtccgacaaaaatattgacagaaacgcatgatgtctatttgcgggcggctgtgcatata
tgcgactttgaaggcaactctgacggtcatagcatccaaaccattctaactcatttagag
ccacgccgagtaatacttgttcgtggtaacccatcagataccgactttctgcgcatgcag
cttcagaagtcacttttgcgggcagaaatccatgcgccgaaacaatctcagatggttgaa
tgtatctcagaaaacacgacatttcgccttgagctgtcccaggacctcttgtcccatacc
catatgcgcgatgtggcgggatatcaagttggttgggtggagggcaatgttttgatatcc
agaggaggaggtgaccctgcagctacactagtcccagccaagtcgggaatgatttgcgaa
gcacagcgcactggactgcaaccaaataccggagcatctcaaactgcgacaagggagaca
agaacacaagacgctcgcgttggtttagacttcagtcgtgaaatagatgagcaatcgaca
gcttcagagcttttcctagatgaacttgttgtgaaaaaacctgcagcacttgttggaagc
ctcaaacttagtgactctaggttggcgttggcggcagcaggttgcgcaactgaattccgt
ggaggcgcgctgatgtgcacaggagacaaagtacgtgttaggaaaacggtaaatgtgatg
ggtgcagaaaaccttctactcgaagggaatctgtgtgatacatttttcagtgtacgttcg
acgttgtaccatcaccaccaagtatag
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