Micromonas commoda: MICPUN_55259
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Entry
MICPUN_55259 CDS
T02695
Name
(RefSeq) predicted protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mis
Micromonas commoda
Pathway
mis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MICPUN_55259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mis03021
]
MICPUN_55259
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_55259
Transcription machinery [BR:
mis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MICPUN_55259
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
MICPUN_55259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Torus
zf_CCCH_4
zf-CCCH_3
zf-CCCH
zf-CCCH_2
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
8250153
NCBI-ProteinID:
XP_002507622
JGI:
MicpuN3_55259
UniProt:
C1FE11
LinkDB
All DBs
Position
1:complement(join(1154574..1154883,1154950..1155272))
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AA seq
210 aa
AA seq
DB search
MWDSRQKRRPRCQQAQEKTTARQAAKLCSLTPRASQPTVLTTTTLHQPQTVCRHWLRGLC
MKGNGCGFLHQFDKRRMPTCRFFAKYNECREPDCPFKHSLEDVKDCNMFKLGFCIHGKLC
RYRHASLKAPPMPTFEAALIGTPGHLHGAPSFVQRYQLGLVNEETISGNIRPTSTLGPGL
PPLPPGPPPQRSKVVNRPLAINANPALDDE
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgtgggacagccggcagaagcgccgtcctcgatgccagcaagcgcaagaaaaaactacc
gccaggcaagctgcaaaactgtgctctttaactcctcgcgcatcccaaccgaccgttctc
accacaaccacactgcatcaaccgcagacagtttgccgtcattggcttcgcgggctctgc
atgaaaggaaatgggtgcgggtttcttcaccagtttgacaagagacgaatgcccacttgt
cggttttttgcgaaatacaatgagtgcagggaaccggattgtcctttcaagcactccctt
gaagacgtgaaagactgcaacatgttcaagcttggattctgtatccatggaaaactatgc
agatatcgacatgcttcattaaaagccccgccaatgccaacatttgaggcagctctcatt
ggaacacctggccacctgcacggagcaccttcctttgtccagcgctaccaattagggcta
gtaaacgaagaaacaatttcgggaaacatacgtcccacgtctacactcggaccgggtctt
ccgcctctacctccgggaccccctccgcagagatccaaagttgtcaaccggccactggca
atcaacgcaaatccagctctggacgatgaatag
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