Micromonas commoda: MICPUN_55263
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Entry
MICPUN_55263 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_55263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_55263
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MICPUN_55263
mRNA degradation factors
3'-5' decay
Pan complex
MICPUN_55263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Motif
Other DBs
NCBI-GeneID:
8250154
NCBI-ProteinID:
XP_002507625
JGI:
MicpuN3_55263
UniProt:
C1FE15
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All DBs
Position
1:complement(join(1164718..1165941,1166003..1166486,1166573..1166820))
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AA seq
651 aa
AA seq
DB search
MKPDTQSSPTGPNEVSGHKYATIADRTPPAPDANLSKSQDFSARGVRTSASPFVPRASGQ
HQNATSIAVTPVQSSLPDQAHISVILGRKSGRQEHDFDQRAAIHRFRTAAVPFNPTATLN
DKTADVRLPSEDDFTSGPADPSSESPKRPFPHHQSASVHANAVPRSINSQGTRSSSISPA
SIRVKSNKIGHSKMSTRFITEQLYEELRRRRYLENSQMDESRVHSGSLPRVGSLIVSGFP
FTLSVLNQYHSLVPLDDFSLKNSAHAFGLHSILLRGISSVDGMPYALRRLHHRYVVPSAE
LTLAARVAVDRWSRLVDHPHIAALHGTFVSADMWDTPALFFAHEYHAGAVSLESVHCGES
DDCLAASEAEIWMYASQLCCALKAVHDIGLAVGGSASLAPNKLLLCSKGAFVDGPGGAHG
CRIRLAAVGVIDVLRPEAVGLHGGRARTIAQRDDLRAVGISMANILCGSVNLSSADALAI
ASRRCSPMLNRVIMGLVSGGIADSSTFSQMLVPIIFDSLKFERALCDQLKSELAKELENG
RLLRLLIKLTFINERPDGDMDPNWAETGDRYILKLFRDFVFHQHDNDGNSITDWGHVFEC
LNKLDTGVAEKVLLVSRDEMSMLVASYADIKRCTEVAYAELIIESKRVDRF
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccgatacccaaagttcgccaacggggccgaatgaagtttcaggacacaagtat
gcgactatcgctgacaggacccctcccgcacccgacgcgaatttgtcaaaaagccaagac
ttttccgcccgaggagtcaggacttcggcgtcgccctttgttcccagggcttcaggacaa
caccaaaatgccacttcaatcgccgtgactccagtacaatcgtcgttaccggatcaggcg
cacataagtgtcatactgggccgtaaatctggaagacaggaacacgacttcgaccaacgg
gccgcaatccatcgattccgcacggcagctgtcccgttcaatcctactgcaacgctgaat
gacaaaacggcggatgttagacttcccagcgaagacgacttcacatctggccctgctgat
ccatcatcagaaagccccaaaaggccgttccctcaccaccagtctgcatctgttcatgcg
aatgcagttcctcgcagcattaactctcaagggacaagatcatcatcaatttcgcctgcg
tcgattcgagtgaagtcgaacaaaattgggcactccaaaatgtccactcggttcataact
gagcaactttacgaagagcttcgacgccgaaggtatcttgagaactcacaaatggacgag
tcacgcgtgcattcaggatctcttccaagggtaggatcactgattgtctccggttttcca
tttacgctctctgttctcaatcagtaccattcactcgtgccacttgatgatttttctttg
aaaaactctgcgcatgcgtttggtctccattcaatcttgctcagaggtataagttctgtt
gatgggatgccttacgctctccgacgtcttcatcatcgctatgttgttccgagcgcagag
ctcactttggctgcacgggttgccgtggatcgctggagtcgtttggttgatcatccacac
atagcggctcttcacggaacttttgtgagcgcagatatgtgggatacacccgcgttgttc
ttcgcacatgaataccatgctggtgctgtttctcttgaatcggtgcattgcggggagtcg
gatgattgcttggccgcttcggaagctgagatatggatgtatgcatctcagctttgttgt
gccctgaaagcggtgcatgatataggattggcggtggggggttcagcatcgcttgctcct
aacaagcttcttctatgttcaaaaggtgcattcgtagatggtccaggaggcgcacacgga
tgtcggatccgcttggcagcagtaggcgtcatcgacgttttgcgaccggaagctgtcggg
ttacatggagggcgggcgcgcactattgcgcagcgcgatgacttaagagcagtcggtatt
tcgatggccaacattctttgtgggtcagtcaatctttcatctgctgatgccctcgccatc
gcgagtcgccgttgctcccccatgctgaatcgtgttatcatgggactcgtctctggcggt
attgctgatagcagtacttttagccaaatgctagtccccattatattcgattctcttaag
tttgaacgcgcactttgtgatcagctgaagtcagagctcgccaaggagttagaaaatggc
cgccttctacgattgcttattaaactgacgttcataaacgagcgtccagacggtgacatg
gatcctaattgggctgaaactggtgacaggtacatattgaagctgtttcgagattttgtg
tttcaccaacacgacaacgatgggaactctattactgactggggccacgtttttgagtgt
ctaaacaagctagatactggcgtcgcggagaaggttttacttgtatctcgtgatgagatg
tccatgcttgttgcaagttacgctgatattaagcgatgcactgaagtagcttatgcagag
ctaatcattgaatccaagcgagttgatagattttga
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