Micromonas commoda: MICPUN_55886
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Entry
MICPUN_55886 CDS
T02695
Name
(RefSeq) TATA binding protein associated factor 5 protein
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mis
Micromonas commoda
Pathway
mis03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MICPUN_55886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mis03021
]
MICPUN_55886
03036 Chromosome and associated proteins [BR:
mis03036
]
MICPUN_55886
Transcription machinery [BR:
mis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
MICPUN_55886
Coactivators
SAGA/TFTC/STAGA complex
MICPUN_55886
Chromosome and associated proteins [BR:
mis03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
MICPUN_55886
STAGA complex
MICPUN_55886
TFTC complex
MICPUN_55886
SAGA complex
MICPUN_55886
SLIK complex
MICPUN_55886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
LisH
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_WDR11_2nd
Beta-prop_IP5PC_F
WD_LRWD1
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
8240909
NCBI-ProteinID:
XP_002500199
JGI:
MicpuN3_78967
UniProt:
C1DYM9
LinkDB
All DBs
Position
2:complement(join(1342104..1343018,1343124..1343188,1343249..1343657,1343700..1344170,1344291..1344551))
Genome browser
AA seq
706 aa
AA seq
DB search
MSAEEPLDRIVLRYLQKRGYKDAEKAFLKESKSQKLTEMALVPHLGPDAAISDHILYYNE
EDADPNSLVQGYRLLRDWVNHSLDMYKPELMRILWPMFVYCHLELVNRDEGHVAREFHRR
FGPDHLLLHEEDVRALAGLATPAHAESDATARKFRDNRIPISCCQYTFDLLVKYLHHANQ
MALLAILNAHISVTVVKGDPAPHTDEAELSAKQVITGVGPPSRIDKFNAKYDQGRWGVLE
DSVEERAKKEGAKNAGDGAEGGEEGGEGGDGKEGGDKGDKDGGDKPTKDAAKKKKEKDDK
KEDAEDGGDASVKYEPTIVPSVIPVPELDYHHTRAAIEDIRYRVELGRGALPSVAFYTFT
HAHKYLHCCVTASDASLVVGGFADSVVRVWDINKSTPGANRDTEEDADGAATNVGENGEK
LDANSRIARPVPCVEYVGHSAAVHGVDLSPGHDFLLSCSRDQTIRVWSTRLEIPLAAYKS
HRFPVWDVKWCGTGHYFASASNDCTARVWAMDESQPRRVMVGHLADVDCVAWHPNTNYIA
TGSTDRTVRLWDVQTGDCVRIFTGHRGGVRSLAMSPDGKSMASGSDDGGVLVWDLATAKC
SHAFEGHGGAVYSLDYSHGAGTVLASGGADETVKLWDVSQSALNEANGGEAGAVKAENKA
SAAARKPPMTSLRTKSTPVFNVQFTGRNLLMAMGARAPSVRYQAAA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcggaggagccgctcgatcgcatcgtgcttcgctacctacagaagcgaggctac
aaggacgccgagaaggctttcctcaaggagagcaagtcccagaagctcacggagatggcg
ctcgtgccccatctgggcccggacgccgccatcagcgaccacatcctgtactacaacgag
gaggacgcggacccaaactcgctggtgcagggctacaggctcctgcgcgactgggtgaac
cactcgctggacatgtacaagccggaactcatgcggatcctctggcccatgttcgtctac
tgccacctggagctcgtcaatcgcgacgagggccacgtcgcgcgcgagttccaccgcagg
ttcggccccgatcacctcctcctccacgaggaggatgttcgggcgctcgccggcctcgcc
acgcccgcgcacgccgaatccgacgccaccgcgcgcaaattccgcgataaccgcatcccg
atctcctgctgccagtacaccttcgacctcctggtcaagtacctccaccacgccaaccag
atggcgctgctggccatcctcaacgcgcacatctccgtcaccgttgtcaagggcgacccg
gcgccgcacaccgacgaagccgagctctccgcgaagcaggtcataaccggcgtcggcccg
ccgtcgcgcatcgacaagttcaacgccaagtacgaccaagggcggtggggcgtcctcgag
gacagcgtggaggagcgtgctaaaaaggagggggctaaaaacgccggcgacggggccgag
ggaggcgaggagggcggcgagggcggggacgggaaggagggtggcgataagggcgataaa
gacggcggggataagcccaccaaggacgccgcgaagaagaagaaggagaaggacgacaag
aaggaggacgccgaggacggcggggacgcgagcgtcaagtacgagccgacgatcgtgccc
tccgtcatcccggttcccgagctggactaccaccacacccgggccgccatcgaggacatc
cgataccgcgtcgagctcggacgtggcgccttaccttccgtcgccttctacaccttcacg
cacgcgcacaagtatctgcactgctgcgtcaccgcgtcggacgcgtcgctcgtggtgggc
gggttcgcggattcggtggtgagagtttgggacatcaacaagtcgacgcccggggcgaac
cgggacacggaggaggacgcggatggggcggcgacaaacgtgggggagaacggcgagaag
ctggacgccaactcgcgaatcgcgaggcctgtaccgtgcgtggagtacgtcggtcactcc
gccgcggtgcacggcgtcgacctctccccggggcacgactttctcctctcctgctcccgc
gatcagacgattcgggtgtggtcgacgcgactggagatccccctcgccgcgtacaagagc
cacaggttccccgtctgggacgtcaagtggtgcggcaccggccactacttcgcctcggcg
tccaacgactgcaccgctcgggtgtgggccatggacgagtcgcagccgcgaagggtcatg
gtcggacacctcgccgacgtggactgcgtcgcgtggcacccaaacaccaattacatagcg
acgggcagcaccgaccgcaccgtgcgcctgtgggacgtgcagacgggcgattgcgtccga
attttcaccggccaccgcggcggggttcggtcgctcgcgatgtccccggacggcaagagc
atggcgagcgggtcagacgacggcggcgttttggtctgggacctcgccaccgctaagtgc
tcgcacgcgttcgaggggcacgggggcgcggtgtactcgctggactacagccacggcgcg
ggcaccgtgctcgcgtcgggcggcgcggacgagaccgtcaagctgtgggacgtgtcgcag
tcggcgttgaacgaggccaacggcggcgaggcgggcgcggtgaaagcggagaacaaggcg
tcggcggcggcgaggaaaccgcccatgacgagcctgaggaccaaatcgacgccggtgttt
aacgttcagttcaccgggcgtaacctgctgatggcgatgggggcgcgagcgccgtccgtc
aggtaccaggcggcggcatga
DBGET
integrated database retrieval system
