Micromonas commoda: MICPUN_55896
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Entry
MICPUN_55896 CDS
T02695
Name
(RefSeq) hypothetical protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_55896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_55896
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MICPUN_55896
mRNA degradation factors
5'-3' decay
Decapping complex
MICPUN_55896
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mis12
Motif
Other DBs
NCBI-GeneID:
8240903
NCBI-ProteinID:
XP_002499708
JGI:
MicpuN3_55896
UniProt:
C1DYL7
LinkDB
All DBs
Position
2:join(1317297..1317319,1317600..1319829)
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AA seq
750 aa
AA seq
DB search
MDRFDASRQNGFFGGGPADESMLGELGGDMEDDYSLPQDVEEVYIPSTKDEELGGLFAST
MQIADRDVNSYIQTSPGGLLRPQDLMGAAAAPPGAPQSPFQAQQQAFEEERRKYQQQMAM
QQMIAERERAQQQQQQRSQMTLEQMEAMHRANMGGGPPMPSAGMLRGIPPPPAHMAPPQM
GQRGPNPAMGTPPPMQGFPPLGAQGPPPGMPPPPGMPPPPRGYPSPNFNNDRGHGGRGRR
GGGGAEWADANNEDTFGESNVRGGTHVPGMPGVQMTQEEKQQMSQQQDQGGWDQGGGYGQ
GQRRQQYDRNGGGRGGRGGRGGQRHNHRNRSAKLMTSDEIEQILRIQWAATHPMDRAAYD
HDYYYQCWLNTNNKGKLREPFAPETLRELAPQAKEARAPTAFVALEGMGRVPFSNIRAPK
PILDFSGKGEKDGGGGREEADGDMSGGRRLEQEPLLAARIMIEDGMCLLLDVDDIDRQVE
ENMAREAPAAMARRRDFLLEGLAGTLRLPAAPVLTPQAVKRGESDAVFERICALHKGRVM
LAKLLPRLRPGCGAASSLVWAVMRHAPALLISGEADRDKSVAAAGHDETQHLRDSAEQLA
TEAAAAVASLNYNATASCIEALAGAMVAHDRSKLPSLAAASGPGASLAQLLRAVLEQGSR
LGILGADYDSSPEWSDCFTTLFGILDAQLATLQTHVEATKAGDKKAAAQALAAAGGAGGL
DLPRDLLRACVPHCSAEQRETIRNRIQSCQ
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggacaggttcgacgcctcgaggcaaaatggcttcttcggcggaggccccgcggacgag
agcatgctcggcgagctcgggggcgacatggaggacgactactcactaccccaggatgtg
gaggaggtctacatccccagcaccaaggatgaggagctcggcgggctcttcgcgtcgacg
atgcagatcgccgatcgcgacgtcaactcgtacatccaaacgtccccgggcggcctgctt
cgaccccaggacctcatgggcgccgcggcggcgccacccggcgcaccgcagtcgcctttc
caggcgcagcagcaggcgttcgaggaggagcgcaggaagtaccagcagcagatggccatg
cagcagatgattgccgagcgcgagcgcgcgcagcagcagcagcagcagaggtcgcagatg
acgctggagcagatggaggctatgcacagagccaacatgggcggcggacccccgatgccc
tccgcgggcatgctccgcggtattcctccgcccccggctcacatggcgccgccgcagatg
ggtcagcggggccccaacccggccatgggaacgccgccccccatgcagggcttccccccg
ctgggtgcgcagggcccgccccccggcatgcccccgccgcccggcatgcccccgccgccc
cgcggctacccgtcccccaacttcaacaacgaccgcggtcacggcggccggggccggcgc
ggcggcggcggcgcggagtgggcggatgcgaacaacgaggacacctttggcgagtccaac
gttcgcggcggcacgcacgtgcccggcatgcccggcgttcagatgacgcaagaggagaag
cagcagatgtcgcagcagcaggaccagggcggttgggaccagggcggtgggtacggccag
ggtcagaggaggcagcagtacgaccgcaacggcggaggccgcgggggcaggggcggccgc
ggcggccagaggcacaaccaccgcaaccgcagcgccaagctgatgacctcggacgagatc
gagcagatccttcgcatccagtgggcggcgacgcacccgatggacagggccgcgtacgat
cacgactactactaccagtgctggctcaacaccaacaacaagggcaagctgcgagagcca
ttcgcccccgagacgctccgagaactcgcgccgcaggcgaaggaagcgagggcgcccacg
gcgtttgtcgcgctggagggcatgggccgcgtccccttctccaacatccgcgcgcccaag
cccatcctcgacttctccggtaaaggggaaaaggacggcggcggcgggcgcgaggaggcg
gacggtgacatgagcggcggccgccgcctcgagcaggagcccctgctcgcggcgaggatc
atgatcgaggacggcatgtgcctcctgctcgacgtcgacgacatcgaccgacaggtggag
gagaacatggcgagggaggcccccgcggcgatggcgcgacgccgcgactttctcctcgag
gggctcgccgggacgctccgcctcccagcggctcccgtgctcacgccgcaggcggtgaag
cgaggcgagtcggatgccgtctttgagcgaatctgcgccctgcacaagggccgcgtgatg
ctcgccaagctcctcccgcggctcaggcccgggtgcggcgcggcgtcgtccttggtgtgg
gcggtgatgcgccacgccccggcgctgctcatctccggcgaggcggatagggacaagtcc
gtcgccgccgccggtcacgacgagacacagcacttacgggatagcgcggagcagctcgcg
acggaggcggcggcggccgtggcgtccctcaactataacgccacggcgtcgtgcatcgag
gcactcgcgggggcgatggtggcgcacgaccgatcaaaactcccgagcctggcggcggct
tcggggcccggggcgtcgctcgctcaattgctgcgtgcggtgctggagcagggcagccgg
ctcgggatcctcggcgcggactacgactcgtccccggagtggtcggattgcttcaccacg
ctgttcggaatcctcgacgcgcagctcgcgacgctccagacgcacgtggaggcgaccaag
gctggggataagaaggccgccgcgcaggcgctggcggcggcgggcggagccggcgggctc
gacctgcccagggatctgttgcgcgcgtgcgtgccgcactgctcggcggagcagcgcgag
accattcgcaaccgcatccagtcgtgccagtga
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