Micromonas commoda: MICPUN_55915
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Entry
MICPUN_55915 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_55915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_55915
Enzymes [BR:
mis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
MICPUN_55915
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MICPUN_55915
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MICPUN_55915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
DUF6902
IG_AIR9
DUF7632
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
8240894
NCBI-ProteinID:
XP_002500183
JGI:
MicpuN3_55915
UniProt:
C1DYJ9
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All DBs
Position
2:complement(join(1282490..1284209,1284322..1284374))
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AA seq
590 aa
AA seq
DB search
MSLTVVRATLNNDTPISGVELSPYVVTRKGDGTSTTADIPESDPADGAYLRYRWYRSGSH
RKASVCSVHPGEPAVLQNVHSKTYHCDEECFTQSWREWMRDRIAQGLDQEQRNPLWRPPH
LKDQANHSSPHGSSHNLNAADGHHKQHRPPRHVEPIVAKDEPETWTEVGREKSYSATMDD
VGHLLKFEVVPVDAASGAGCGAPETFTTGRVIPAPTPPRRNLVPVARHDGSEGGTFTVLT
YNVLADLYATSEMYGYTPQWALSWNYRRQNILKEIVMHDADILCLQEVQSDHFEDFFAGE
LAKAGYTAVYKKKTAQVFSQGTYVIDGCAIFFKKDRFTLIKKYEVEFNKAALSLVESLGG
SSQKKDALNRLMKDNVALIVVLEALEQPGVQAPQGKRQLLCVANTHIHANTELNDVKLWQ
VHTLLKGLEKIAASAEIPMVVCGDFNSVPGSAAHNLLSNGRVDGAHPELATDPFGILRPP
SKLQHPLPLVSAYTALTKQPCLESEAAERQRTRMDAQGTGEPIFTNCTKDFFGTLDYIFY
TDDTLAPLSLLELPSEKECRNKYGGLPNTQCSSDHVALMAEFQWGAARQW
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgaccgtcgtccgcgcgacgctcaacaacgacacgccaatctcaggggttgag
ctgtcaccgtacgtcgtgacgcgcaagggggacggcacgtcgaccaccgccgacatcccg
gagtcggatcccgcggacggcgcctacctgcggtacaggtggtaccgcagcggatcgcac
aggaaggcttcggtgtgcagcgtccaccccggcgaacccgcggtgcttcagaacgtccac
agcaagacgtaccactgcgacgaggagtgcttcacgcagtcgtggagggagtggatgcgc
gaccgcatagcccaaggtttggaccaggagcagcgcaacccgctgtggaggccgccccac
ctgaaggaccaggcgaaccactcatccccgcacggctcgagtcacaacctcaacgccgcc
gacggccatcacaagcagcacaggcccccgcggcacgtcgaaccgatcgtcgccaaggat
gagccggagacgtggacggaggtgggccgggagaagagttacagcgccacgatggacgac
gtcgggcacctgctcaagtttgaggttgtcccggtggatgccgcctccggcgccgggtgc
ggagcgcccgagacgttcaccaccggccgagtcatcccggcgccgacgccgcctcggcgt
aacctggtgcccgtggcgagacacgacgggagcgagggcgggactttcaccgtgctcacg
tacaacgtcctcgcggatctctacgccacgagcgagatgtacgggtacacgccgcagtgg
gcgctgagctggaactacaggcggcagaacatcctcaaggagatcgtcatgcacgacgcg
gacatcctgtgtctgcaggaggtgcagagcgatcacttcgaggacttcttcgccggggag
ctcgccaaggctggctacaccgcggtgtacaagaagaagacggcgcaggtgttcagccag
ggcacgtacgtcatcgacgggtgcgccatctttttcaagaaggaccggttcacgctgatc
aagaagtacgaggtggagttcaacaaagcggcgctctccctggtggagtcgctcggcggg
tcctcccagaagaaggacgcgctcaaccggctgatgaaggacaacgtcgcgctgatcgtc
gtgctcgaggcgctggagcagcccggcgtccaggcgccgcagggtaagcgtcagctgctc
tgcgtggcgaacacccacatccacgccaacaccgagctcaacgacgtgaaactctggcag
gtccacaccctgctcaagggcctggagaagatcgccgcgtcggcggagattcccatggtg
gtctgcggcgacttcaactcggtcccgggcagcgccgcgcataacctcctgagcaacggc
cgggtggacggggcgcatcccgagctcgcgacggatccctttggcattctcaggcccccg
tcgaagctgcagcacccgctgccgctggtgtcagcgtacacggcgctgaccaagcagccg
tgcctggagagcgaggcggcggagaggcagaggacgcgcatggacgcccagggcacgggc
gagcccatcttcaccaactgcaccaaggatttcttcgggacgctcgactacatcttctac
acggacgacaccctggcgccgctctccctgctcgagctcccctccgagaaggagtgcagg
aacaagtacgggggactgcccaacacccagtgctcgtcggatcacgtggcgctcatggcg
gagttccagtggggcgcggcgaggcagtggtag
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