Micromonas commoda: MICPUN_56935
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Entry
MICPUN_56935 CDS
T02695
Name
(RefSeq) predicted protein
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
mis
Micromonas commoda
Pathway
mis03040
Spliceosome
mis04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MICPUN_56935
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
MICPUN_56935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mis03041
]
MICPUN_56935
04121 Ubiquitin system [BR:
mis04121
]
MICPUN_56935
03400 DNA repair and recombination proteins [BR:
mis03400
]
MICPUN_56935
Enzymes [BR:
mis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
MICPUN_56935
Spliceosome [BR:
mis03041
]
Complex B
Other components
Prp19 complex
MICPUN_56935
Complex C
Prp19-CDC5 complex
MICPUN_56935
Ubiquitin system [BR:
mis04121
]
Ubiquitin ligases (E3)
U-box type E3
MICPUN_56935
DNA repair and recombination proteins [BR:
mis03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
MICPUN_56935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_EIPR1
WDR90_beta-prop_4th
NBCH_WD40
U-box
zf-Nse
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_NWD2_C
Beta-prop_Vps41
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
8241706
NCBI-ProteinID:
XP_002500515
JGI:
MicpuN3_56935
UniProt:
C1E1N5
LinkDB
All DBs
Position
3:join(688189..688287,688443..689825)
Genome browser
AA seq
493 aa
AA seq
DB search
MFCSISGTTPEDPVISSKTGHLYERSLITKALQETGECPVTKTPMTLEDLLPVKSSTTVK
PRTTAAASIPGLLSIFHNEWDALMLETHELRVDLHGTRQELSHALYQHDAACRVISRLMK
ERDEAREALANARAAGPSAAPGKRAMSSDAMDVDGDAPGGDGKKQRSGVPPEAIDAMTAK
SKELSKARKKREISPTLASAEDIGKMEVGAIAPCHATKAKGIRAVCVNPLNADEVATGGA
DGSLALFDAAKGKRGALMTGHKKAVTDVAYAGDAILTSSADKTVKIWRGGAEVAALAGVH
EGEVVAVSAHPTNAYAVSIGGDGAWAFVDVGAAECLSVQRDADSEYTCGGFHPDGLILGT
GAADSSVKIWDVKTSKVAAKVEGHVGAVSAMSFSENGYYLATCANDGVKLWDLRKLKNFK
SVEAAGVRCVRFDHSGHYLAVGGADACVHNVKAEWEVVKRWEASKAPVNALEFAADAKAL
YAGCSDHNLRVIA
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgttctgctcgatctcgggcacgacgcccgaggacccggtcatctcctcgaagactggg
cacctctacgagcggtccctcatcaccaaggctctccaggagaccggcgagtgcccggtg
accaagaccccgatgaccctcgaggacttgctccccgtcaagtcgagcacgacggttaaa
ccccgaaccaccgccgccgcgtccatccccgggctcctctccatcttccacaacgagtgg
gacgcgctcatgctcgagacgcacgaactccgcgtcgaccttcacggcaccaggcaggaa
ctctcgcacgcgctgtaccagcacgacgccgcgtgccgcgtcatctccaggctcatgaag
gagcgcgacgaggcgcgcgaggccctcgcgaacgcgcgcgcggctggtccctccgccgcc
cccggcaagcgagccatgtcatctgacgccatggacgtcgacggcgacgcgcccggcggc
gacggcaagaagcaaagaagcggcgtcccgcccgaggcgatcgacgcgatgaccgccaag
agcaaggaactgagcaaggcgcgtaagaagcgcgagatctctcccaccctcgcctccgcc
gaagacatcggcaagatggaggttggcgccatcgcgccgtgccacgcgaccaaggcgaag
ggcatccgcgccgtttgcgtcaaccccttgaacgccgacgaggtggcgacgggcggcgcc
gacggatcgctcgcgctcttcgacgccgccaagggcaagcgcggcgccctcatgaccggt
cacaagaaggccgtgaccgacgtcgcctacgccggcgacgccatcctcacgtcatccgcg
gacaagacggtcaagatttggcgcggcggcgccgaggtcgccgcgctcgcgggggtccac
gagggcgaggtcgtcgccgtcagcgcgcaccccacgaacgcgtacgcggtgtccatcggc
ggcgacggcgcgtgggcgttcgtggacgtcggcgcggcggagtgcctcagcgttcagcgc
gacgcggattccgagtacacgtgcggcggctttcaccccgacggtctcatcttgggcacg
ggcgccgccgactcgagcgtcaagatctgggacgtcaagacctccaaggtggccgccaag
gtggagggccacgtcggtgcggtgagcgccatgtcgttctccgagaatgggtactacctc
gcgacgtgcgcgaacgacggcgtgaagctctgggacttgaggaagctgaagaactttaag
agcgtcgaggcggcgggcgtgcggtgcgtgcggttcgaccacagcggtcactacctggcc
gtgggcggcgccgacgcgtgcgtgcacaacgtcaaggcggagtgggaggtggtgaagagg
tgggaggcgagcaaggcgccggtgaacgctctggagtttgcggcggatgccaaggcgctc
tacgcgggctgcagcgaccacaacctcagggtcattgcgtga
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integrated database retrieval system
