Micromonas commoda: MICPUN_58037
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Entry
MICPUN_58037 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mis
Micromonas commoda
Pathway
mis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MICPUN_58037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mis03041
]
MICPUN_58037
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MICPUN_58037
Spliceosome [BR:
mis03041
]
Complex C
Other components
Step II factors
MICPUN_58037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
AAA_22
DEAD
GIPC1_GH2
AAA_19
nSTAND3
AAA_30
Cas3-like_C_2
ABC_tran
AAA_16
Flavi_DEAD
PhoH
TsaE
T2SSE
Motif
Other DBs
NCBI-GeneID:
8243144
NCBI-ProteinID:
XP_002501463
JGI:
MicpuN3_58037
UniProt:
C1E4H2
LinkDB
All DBs
Position
4:join(1157997..1160078,1160302..1161732)
Genome browser
AA seq
1170 aa
AA seq
DB search
MSALNKLAHLSLVNKVTTELENHIGIADKTLSEFIIDLAGKHDEPRAFQKALEDAGAELS
FDLVRSLLAIIQRMKPGGNKGGAGGGGGGVGGAGGPPRPVRPTADNPLPGLAVRDDVERA
KALTREIYGDNPITANMADDPRFLDRRDDDRGRGGRDRSRDRDSGRGGRDRSRDRGRSRD
RGGGSSSAAALKNGEPEVGAIYRGRVTNVMDFGCFVELTEFSRKFEGLVHVSMISSQKGV
NARDQVQRDQSVWVKVTTRSATRMALSMRDVNQSTGDDLLGGGGNEGSANGYANPAGPAA
NRLGQSLRGLSGITPTAEDVAGDTRRRPVKRLSSPERWEAKQLIASGVLKTEEYPTYDAE
NEGLLAYEEEAEQEIEIEINEDEAPFLAGQTANGGDVSPIKIVKNPDGSLQRAAMTQSAL
AKERRELKEQQQRTALESIPKDLNRPWEDPMPEAGERHLAAELRGVGLGGYEMPQWKVEA
FGKAPTFGQKSSLPMQAQRESLPIFKLRDELIQAVNDNQVLVVIGETGSGKTTQMTQYLA
ESGYTSRGRIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTSPETVIKYMTD
GMLLREALLDDALSQYCLIMLDEAHERTIHTDVLFGLLKKCCAKRKDLKIIVTSATLDAE
KFSSYFFNCPIFTIPGRTFPVEVLYTKAPETDYMEDDTHLSQTIRKLSQDAALITVMQIH
LTEPEGDILLFLTGQEEIDTSCQILFERMKGLGPSVPDLHILPVYSSLPSEMQTRIFEPA
PPGSRKVIVATNIAEASLTIDGIYYVVDPGFAKQKVFNPKVGMDSLVVAPISQASARQRA
GRAGRTGPGKCFRLYTESAYKNEMLPTSVPEIQRTNLGTTTLTLKAMGINDLLHFDFMDP
PPPQTLISALEQLYNLGALDEEGLLTRLGRKMAEFPLEPPMSKMLIAAVDLGCSDEILTI
VACLSAQNIWFRPREKQAAADQKKAKFFQPEGDHLSLLTVYESWKAQKFSSPWCFENYLQ
ARSLRRAQDVRKQLLTIMDRYKLDVVSAGRNFNKIRRAICSGFFFHSAKKDPQEGYKTVV
ENTPTYIHPASALFQRQPDWVVYHELVLTSKEYMRECCVIEPKWLAELAPRFFKLCDPRH
ISKRKRMERLEPLFDRFNDPQAWRLSKRRG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgctcaacaagctcgcgcacctgtcgctggtgaataaggtgacgacggagctc
gagaaccacataggcatcgcggacaagaccctctcggagttcatcatagacctcgcgggg
aagcacgacgagccgagggcgttccagaaggcccttgaggatgccggcgcggagctgtcg
ttcgacttggtgcgcagcctcctggccatcatccaacgcatgaagcccggcgggaacaag
ggcggtgctggcgggggtggagggggcgtcgggggcgcgggcgggccgccgagacccgtg
agacccaccgccgacaatcccctcccggggctggcagtgcgcgacgacgtggagcgcgcc
aaggcgctgacccgggagatctacggcgataaccccatcaccgcgaacatggcggacgat
ccgaggttcctcgacagacgcgacgacgacagggggcgcgggggcagggaccgcagccga
gatcgcgactcgggccggggcggcagggatcgatcgagggacaggggccgctccagggac
cggggcggcggctcctcctccgcggcggcgctcaagaacggcgagcccgaggtgggcgcc
atctatcgcggcagggtcaccaacgtcatggacttcggatgcttcgtcgagctcaccgag
ttcagccgcaagttcgaggggctcgtgcacgtctccatgatctcgtcgcaaaaaggggtc
aacgccagagatcaggtccagcgcgaccagagcgtgtgggtcaaggtcaccacgcgatcg
gccacgcgcatggcgctcagcatgagggacgtgaaccagtccacgggagacgacctcctc
ggcggcggggggaacgaaggatcggccaacgggtacgccaaccccgccggacccgccgcg
aaccgactcggccagtccttacgcggcttatccggaataacccccaccgcggaggacgtc
gccggggacacgaggcggcggccggtgaagaggctctcgtccccggagcgttgggaggcg
aagcagctcatcgcgtccggggttttaaagacggaggagtaccccacgtacgacgcagaa
aacgaggggctgctcgcgtacgaagaggaggcggagcaggagattgagattgagatcaac
gaggacgaggcgccgtttctggcggggcagacggctaatggcggggacgtgtcgccgatc
aagatcgtgaagaaccccgacgggagtttgcagcgcgcggcgatgacgcagagcgcgctg
gcgaaggagaggagggagctcaaggagcagcagcagaggacggctttggagtccatcccg
aaggacctcaaccggccttgggaggatcccatgccggaggctggcgagcggcacctcgcc
gcggagctcaggggcgtgggcctgggagggtatgagatgccccagtggaaggtggaggcg
ttcggcaaggcgcccacgtttggccagaagtcgtccctgcccatgcaggcgcagcgcgag
tcgctcccgattttcaagctgagggacgagctcatccaggcggtgaacgataaccaggtg
ctcgtggtcatcggcgagaccggatccggtaagacgacgcagatgacccagtacctggcg
gagagcggttacaccagcaggggacggatcgggtgcactcagccgaggcgcgtggcggcg
atgtccgtggcgaagcgcgtggctgaggagtttggatgccgactcggcgaggaggttggg
tacgcgattcgattcgaggactgcacgtcgcccgagactgtgatcaagtacatgacggac
ggtatgctgctcagggaggcgcttctcgacgacgcgctgtcgcagtactgcttgatcatg
ctcgacgaggcgcacgagaggacgattcacaccgacgtcttgttcggcttactgaagaag
tgctgcgccaagcggaaggacctgaagatcatcgtgacgtccgcgacgctggacgcggag
aagttctcgtcgtatttcttcaactgcccgatcttcacgatcccgggacggacgttcccg
gtggaggtgctgtatacgaaggcgcccgagactgattacatggaagacgacactcacctt
tcgcaaaccattcgcaaactctcgcaggacgccgcgctaatcaccgtcatgcagattcac
ctcaccgaacccgagggcgacatcctcctcttcctcaccggccaggaggagatcgacacg
tcgtgccagatcctcttcgaacgcatgaagggcctcggtccctccgtgcccgacctccac
atcctccccgtgtactcgtcgctcccgtcggagatgcagacgcgaatcttcgagcccgcg
ccgcccggttcccgcaaggtcatcgtcgccaccaacatcgccgaggcttcgctcacgatc
gacggcatctactacgtcgtcgacccgggattcgcgaagcaaaaagtcttcaacccgaag
gttgggatggactcgctcgtggtggcgcccatctcgcaggcgtcggcgaggcagcgagcc
ggacgagcgggtcgaaccgggcccggcaagtgcttcaggctgtacaccgagagcgcgtac
aagaacgagatgctccccacgtccgtcccggagattcagcgcacgaacctgggcaccacg
acgctgacgctgaaggcgatgggtatcaacgatctcttgcacttcgatttcatggacccg
cccccaccgcagacgctgattagcgcgctggagcagctctacaacctcggcgcgctcgac
gaggagggactgctgacgaggctcgggcgcaagatggccgagttcccgctcgaacccccg
atgagcaagatgctcatcgctgcggtggatctggggtgctcggatgagattttgaccatc
gtcgcgtgcctatccgcgcagaacatctggttccgaccgagggagaagcaggcggcggcg
gatcagaaaaaggcgaaattcttccagcccgagggcgaccacctgtccttgctcaccgtt
tacgagagctggaaggctcagaagttctcgtcgccgtggtgcttcgagaactaccttcag
gcgagatcgctgcgaagggcgcaggacgtgcgaaagcagctgctgaccatcatggacagg
tacaagctcgacgtggtctccgccgggcgaaatttcaacaagattcgccgagcgatttgc
tccggatttttctttcacagcgcgaagaaggatcctcaggagggatacaagacggtcgtc
gagaacacgcccacgtacattcaccccgcgtcggcgctgtttcagaggcaaccggactgg
gtggtgtaccacgagctggtgctcacgtcgaaggagtacatgcgcgagtgctgcgtcatc
gagccaaagtggctagcggagctggcgccgaggttctttaagctgtgcgatccgaggcac
atctcgaagaggaaaaggatggagaggctggagccgctgttcgatcggttcaacgatccg
caggcgtggcgcctgtccaagcgccgcggctga
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integrated database retrieval system
