KEGG   Micromonas commoda: MICPUN_59039
Entry
MICPUN_59039      CDS       T02695                                 
Name
(RefSeq) predicted protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
mis  Micromonas commoda
Pathway
mis03018  RNA degradation
mis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MICPUN_59039
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MICPUN_59039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mis03019]
    MICPUN_59039
   03041 Spliceosome [BR:mis03041]
    MICPUN_59039
Messenger RNA biogenesis [BR:mis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MICPUN_59039
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     MICPUN_59039
Spliceosome [BR:mis03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    MICPUN_59039
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 8244375
NCBI-ProteinID: XP_002502738
JGI: MicpuN3_59039
UniProt: C1E7K0
LinkDB
Position
6:join(74945..75112,75360..75452)
AA seq 86 aa
MSDDAAPDTGAAKTPADFLKSIRGKPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
GQLKNKYGDAFIRGNNVLYISTAKDK
NT seq 261 nt   +upstreamnt  +downstreamnt
atgtccgacgacgccgcgccagacaccggcgccgccaagaccccggcggacttcctcaag
tccatccgcggtaagcccgtggtggtcaagttgaacagcggtgtggactacaggggcatc
ctcgcgtgcctcgacgggtacatgaacatcgccatggaacagacggaggagtacgtgaac
ggtcagctgaagaacaagtacggcgacgcgttcatccgcggcaacaacgtgctctacatc
tccacggcgaaggacaagtga

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