KEGG   Micromonas commoda: MICPUN_59588
Entry
MICPUN_59588      CDS       T02695                                 
Name
(RefSeq) predicted protein
  KO
K14328  regulator of nonsense transcripts 3
Organism
mis  Micromonas commoda
Pathway
mis03013  Nucleocytoplasmic transport
mis03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    MICPUN_59588
   03015 mRNA surveillance pathway
    MICPUN_59588
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mis03019]
    MICPUN_59588
Messenger RNA biogenesis [BR:mis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     MICPUN_59588
   mRNA cycle factors
    P-body specific factors
     MICPUN_59588
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 8244646
NCBI-ProteinID: XP_002503001
JGI: MicpuN3_59588
UniProt: C1E934
LinkDB
Position
6:1170019..1171188
AA seq 389 aa
MATRRTKAVCRNLPPDLPESAFVRALAAEGFAGRYGYLDYARGAWKQRLPVPSVAWIQFA
DEQALFDFRGAFGGRIFRAGERDDAEERAGGESATENAEGDGEPAPEEGAPAATKNTAVP
EGMEEWRARVEYAPNQKTPRGKQHRDKREGTIGKDAAYLQFVKDLEASMEAPPAPTMTAE
QALERREAAERAATGKSDFKVSALLRYVMEQKKKEMDHRKAAKAAAKAAKGGKKAAGAGA
KDAKPSRRDANKRKKGTAGAQTQPAPKTLPSPKPAPSGASDGNKSKQDGGGKKHPPEPAQ
QRKPTAPAPEPKQGKAKALKQKAPSKPNKPPAPDGGGGAKTADAAGAGGRGGGAGAAGGR
GGGRGGRGGRGGGGKSKPKSNVQVFRSDS
NT seq 1170 nt   +upstreamnt  +downstreamnt
atggcgacccggcggaccaaggcggtgtgccgcaaccttcccccggacctcccagagtct
gcgttcgtgcgcgctctcgcagcggaggggttcgcgggtcgatacgggtacttggactac
gcgcgtggggcttggaagcagaggctgccggtgccgtccgtggcttggatccaattcgcc
gacgagcaggcgctgttcgactttaggggcgcgttcggcggccggatcttccgcgcgggc
gagagggacgatgccgaggagcgcgccggcggcgagtccgcgacggaaaacgcggagggc
gacggcgaacccgcgccggaggagggggcgcccgcggcgacgaaaaacacagctgtgccc
gaggggatggaggagtggcgcgcgcgcgtcgagtacgcgcccaatcagaagacgccgcgg
ggcaagcagcatcgcgacaagcgcgagggtaccatcggaaaggacgccgcgtacctccag
ttcgtgaaggacctggaggcgtcgatggaggcgccgccggccccgacgatgacagcggag
caggcgctggagcgaagggaagcggcggagcgcgcggccacgggcaaatcggactttaag
gtatccgcgctgctgaggtacgtcatggagcagaagaagaaggagatggaccatcgaaag
gccgcgaaggcggcggcgaaggcggcgaagggcggtaagaaggccgccggcgcgggagcc
aaggacgccaagccgagcaggagagacgccaacaagcggaaaaagggaacagctggcgcc
caaacacagccggcgcccaagaccctgccgtcgccgaagcccgccccgagcggcgcctcc
gacggcaacaagtcgaagcaggacggcggggggaagaaacatccgccggaacccgcgcag
cagcggaagccgaccgcgcctgccccggagcccaagcagggcaaggctaaggcgctcaag
caaaaggcgccgagcaagccaaacaagccgccggctcccgacggcgggggcggggccaag
accgcggacgccgccggcgccgggggacgcggcgggggcgcgggggcggcggggggacgc
ggcgggggacgcggcgggcgcggggggcgcggcggcggggggaagtcgaagccgaagtcc
aacgtgcaggtgttcaggagcgacagctag

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