Micromonas commoda: MICPUN_59883
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Entry
MICPUN_59883 CDS
T02695
Name
(RefSeq) predicted protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mis
Micromonas commoda
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mis03016
]
MICPUN_59883
Enzymes [BR:
mis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MICPUN_59883
Transfer RNA biogenesis [BR:
mis03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MICPUN_59883
Prokaryotic type
tRNA splicing ligases
MICPUN_59883
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
8245145
NCBI-ProteinID:
XP_002503505
JGI:
MicpuN3_59883
UniProt:
C1E9Y5
LinkDB
All DBs
Position
7:365715..367256
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AA seq
513 aa
AA seq
DB search
MGVMDLPGGRRTYAQEMEFLERVTPTQWRVREGFVPNMRVPGVFYVNKHLETLMFDELRQ
HVDRGDVGGFLPAVKQLANVACLPGIVSKSIALPDVHSGYGFAIGNVAAFDMSDPNAVVS
PGGVGFDINCGVRVVRTNLHERDVTDIKEKLAQSLFDHIPVGVGSQGIIPTSPAGLEAAL
EMGMDWSLREGYAWAEDKEHCEEYGRMLNADPNKVSARAKKRGLPQMGTLGAGNHYAEIQ
VVDEIFDKHAADKMGIERLGQVMVMIHSGSRGLGHQVATDALTEMERAMARDGILVNDRQ
LACAKISSPEGQNYLSAMSCAANYAWVNRSSMTFLCRQAFAKMFDQTPDDLDMHVVYDVS
HNIAKIEEHVVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLIGGTMGTCSYIL
TGTEKGMEETFGSTCHGAGRARSRNNSRNKLDYTEVLEKLKTKGIAIRVASPKLVMEEAP
ESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtcatggacctccccggcggtcggcgcacctacgcccaggagatggagttcctg
gagcgcgtcacgccgacgcagtggcgcgtgcgcgagggcttcgttcccaacatgcgcgtc
cccggcgtcttctacgtgaacaagcacctcgagacgctcatgttcgacgagctccgtcag
cacgtggaccgcggcgacgtcggcggcttcctccccgcggtcaagcagctcgccaacgtc
gcctgcctccccggcatcgtcagcaagagcatcgcgctcccggacgtccactccgggtac
ggcttcgccataggaaacgtcgccgccttcgacatgtccgacccaaacgcggtcgtctcc
cccggcggcgtgggcttcgacatcaactgcggcgtcagggtggtccgcaccaacctgcac
gagcgcgacgtgacggacatcaaggagaagctcgcgcagtccctcttcgatcacatcccg
gtgggcgtgggttcgcagggcatcatacccacgtctcccgcggggctcgaagccgcgctc
gagatgggcatggactggtccctgcgcgagggatacgcgtgggcggaggacaaggaacac
tgcgaggagtacgggcggatgctcaacgcggatcccaacaaggtgagcgcgcgggcgaag
aagcgggggctgccgcagatgggcacgctcggcgccgggaaccactacgccgagatccag
gtggtggacgagatattcgacaagcacgcggcggataagatgggcatcgagcgtttgggg
caggtgatggtgatgatacactcggggagccgcgggctcgggcaccaggtggcgacggac
gcgctgacggagatggaacgcgcgatggctcgcgacgggatcctcgtcaacgatcgccag
ctggcgtgtgccaagatctcatcgcccgagggccagaactacctcagcgccatgtcgtgc
gcggcgaactacgcgtgggtgaaccggagctcgatgacgttcctgtgcaggcaggcgttc
gccaagatgttcgatcaaaccccggacgacctggacatgcacgtcgtgtacgacgtgtct
cacaacatcgcgaagatcgaggagcacgtggtggacggcgagttgaagacgctgctggtg
caccggaaggggtccacgcgcgcgttcccgccgcaccacccgctgataccggtggattac
cagtacaccggccagcccgtgctcatcgggggcacgatggggacgtgctcttacatcttg
accgggacggagaaggggatggaggagacgtttggtagcacgtgccacggcgcgggtcga
gctcggagccgaaacaactcccgcaacaagctcgattacaccgaggtgctggagaagctc
aagacgaagggcatcgcgattcgggtggcgtcgcccaagctggtgatggaggaggcgccg
gagagttacaaggacgtgacggaggttgtgaacacgtgccacgacgcggggatatcaaag
aaggctgtcaagctccgaccaatcgccgtcgtcaagggttga
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