Micromonas commoda: MICPUN_60493
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Entry
MICPUN_60493 CDS
T02695
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_60493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_60493
03036 Chromosome and associated proteins [BR:
mis03036
]
MICPUN_60493
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MICPUN_60493
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
MICPUN_60493
mRNA degradation factors
5'-3' decay
Decapping complex
MICPUN_60493
Chromosome and associated proteins [BR:
mis03036
]
Eukaryotic type
Gene silencing
piRNA pathway
MICPUN_60493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Pro-rich
Motif
Other DBs
NCBI-GeneID:
8245452
NCBI-ProteinID:
XP_002508100
JGI:
MicpuN3_60493
UniProt:
C1FFF0
LinkDB
All DBs
Position
8:complement(join(123226..124374,124767..124857,124963..125117))
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AA seq
464 aa
AA seq
DB search
MAYQMPPQGYGMPPQGYPQQGYPPQGYQQMPPQGYQQMPPQGYPQQGYPPQQMMQPPPQQ
QQQGSWKDQLALPPRDERYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEES
IPIALTGRDILARAKNGTGKTAAFTIPVLEKTDTSKNVIQAVLLVPTRELALQTSQVCKE
LGKHLNVQVMVTTGGTSLKDDIMRLHQPVHIVVATPGRLVDLASKGVAKLNQCTMLAMDE
ADKLLSPEFQPVIAQLIDFLPRNRQILLYSATFPVTVKSFKEKYLRKPFVINLMEELTLK
GITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAK
MMQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQSVNVVINFDFPKNSETYLHRVGRSGR
FGHLGISVNLITYDDRFNLFRIEKELGTEIQQIPPTIDPAVYCR
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggcctatcagatgccgcctcagggatacgggatgcccccccagggctacccccagcag
ggctatccgccccagggataccagcagatgcccccgcagggctatcagcagatgccaccc
cagggatatccccagcagggctatcctccgcaacagatgatgcagccgcccccgcagcag
caacagcagggtagctggaaggatcagctcgccctcccgcccagggatgagcgttacagg
accgaggacgtcaccgcgaccaagggcaacgagttcgaggactacttcctcaagcgcgag
ctcctcatgggcatcttcgagaagggctttgagcgcccgtccccgatccaggaggagtcc
atcccaatcgcgctcaccggccgcgacatcctggcgcgagccaagaacggcaccggtaag
acggccgcgttcaccatccccgtcctcgagaagacggacacgagcaagaacgtgattcag
gctgtgctgctcgtccccacgcgcgaactcgcgctgcagacgtcgcaggtttgcaaggaa
ctcggcaagcacctgaacgtgcaagtgatggtcaccacgggaggcacgtcgctgaaggac
gacatcatgcgcctgcaccagccggtgcacatcgtcgtcgccacccccggtcgtctggtc
gacctcgcgtccaagggtgtcgccaagctcaaccagtgcacgatgctcgcgatggacgag
gctgacaagctcctctcgcccgagttccaacccgtcattgcgcagctcatcgatttcctg
ccccgcaacaggcagatcctgctgtactccgccaccttccccgtgacggtcaagtctttc
aaggagaagtacctccgcaagcccttcgtcatcaacctcatggaggagctgacgctcaag
ggtatcacccagtactacgcctttgtcgaggagaagcaaaaggttcactgcctcaacacg
ctcttctccaagctccagatcaaccagtccatcatcttctgcaactccgtgaaccgcgtg
gagctgctcgcgaagaagatcacggagctcggatactcgtgcttctacatccacgccaag
atgatgcagtcgcaccgcaaccgcgtgtttcacgatttccgcaacggcgcctgccgtaac
ctggtgtcgtccgacctcttcacgcgcggtatcgacatccagtccgtcaacgtggtcatc
aacttcgactttccgaagaactccgagacgtaccttcaccgcgtgggtcgttccggacgt
ttcggccacctgggcatctccgtcaacctcatcacttacgacgacaggttcaacctcttc
cgcatcgagaaggagctcgggactgagattcagcagatcccgcccaccatcgacccggcc
gtgtactgccgctaa
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