Micromonas commoda: MICPUN_60560
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Entry
MICPUN_60560 CDS
T02695
Name
(RefSeq) predicted protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mis
Micromonas commoda
Pathway
mis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MICPUN_60560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mis03021
]
MICPUN_60560
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_60560
Transcription machinery [BR:
mis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MICPUN_60560
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
MICPUN_60560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf-CCCH_4
zf_CCCH_4
zf_Tbcl
zf-CCCH_9
Torus
zf-CCCH_3
zf-CCCH_10
DIKK1-2-4_C-subdom2
zf-CCCH_2
Astro_capsid_p
HypA
Pox_Ag35
RNA_pol_3_Rpc31
Motif
Other DBs
NCBI-GeneID:
8245770
NCBI-ProteinID:
XP_002508137
JGI:
MicpuN3_60560
UniProt:
C1FFL8
LinkDB
All DBs
Position
8:complement(join(285730..286320,286548..286595,286825..287130))
Genome browser
AA seq
314 aa
AA seq
DB search
MSCQLPPRFCWSSVGILRSIEHNRSRQSPPAEHTRPVEDFTQFLRTTALPLSRRTPPRTV
AMAKEKKEKKEKKEKKEKKEKKEKRPAEDDAEDEPDAKKTKEEEPEVEEANDDDEDDGFK
VHKKSAADANPLSKTYEDITLNCRDCNAEFVFTAGEQEFYNSKGWENQPTRCTECKNAKK
ARFGEGPSSGKPVCYAYQRGECTRGDACRFAHEEGGGGDSRPPSRGAPICYAFQRGECDR
GDSCRFSHDANASTPQKSSAPCYAFQKGECTRGDACRFSHDPNAEAPQRSSAPCYAFQRG
ECDRGDACRFSHEQ
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtcagctcccgccacgtttctgttggtcctccgttggcattctccgctcgatc
gaacacaaccgttcgcgccagtcaccgccggccgaacacacgcgccccgtcgaggacttc
acacagttcctccgcaccaccgcgctacctctatcccgccgaaccccgccccgaacggtc
gccatggccaaggagaagaaggagaagaaggagaaaaaggagaagaaggagaagaaggag
aagaaggagaagcgccccgccgaggacgacgccgaggacgagcccgacgccaagaagacc
aaggaggaggagcccgaggtcgaagaggctaacgacgacgacgaggacgatgggttcaag
gttcacaagaagtccgccgccgacgccaaccccctgtccaagacatacgaagacatcacc
ttaaactgccgcgactgcaacgccgaattcgtcttcaccgccggcgagcaggagttctac
aactccaagggatgggagaaccagcccacccgctgcaccgagtgcaagaacgccaagaag
gcccgcttcggcgagggtccttcctcgggcaaacccgtgtgctacgcgtaccagcgcggc
gagtgcaccaggggcgacgcgtgtcgcttcgcgcacgaggagggcggcggcggcgacagc
cgcccgccctcccgcggcgcccctatctgctacgccttccagcgcggagagtgcgaccgc
ggcgactcgtgcaggttcagccacgacgccaacgcgtccaccccgcagaagtcctccgcg
ccgtgctacgcgttccagaagggcgagtgcaccaggggcgacgcctgccggttctcgcac
gaccccaacgccgaggcgccccagcgctcgtccgcgccgtgctacgccttccagagggga
gagtgcgatcgcggcgacgcctgcaggttctcgcacgagcagtga
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