Micromonas commoda: MICPUN_62843
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Entry
MICPUN_62843 CDS
T02695
Name
(RefSeq) SNF2 super family
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
mis
Micromonas commoda
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mis03021
]
MICPUN_62843
Transcription machinery [BR:
mis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
MICPUN_62843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DUF3535
Helicase_C
HEAT
TOR1L1_N
HEAT_EF3_N
HEAT_EZ
DEAD
HEAT_ECM29
Kinesin_assoc
Glyoxalase
HEAT_2
Motif
Other DBs
NCBI-GeneID:
8248297
NCBI-ProteinID:
XP_002509157
JGI:
MicpuN3_62843
UniProt:
C1FJW2
LinkDB
All DBs
Position
12:join(1055831..1055980,1056102..1058495,1058815..1061715)
Genome browser
AA seq
1814 aa
AA seq
DB search
MAEEGGGSRLDRLLRLIEAGSTPAARNEAARQIGEIASHHPNQLPNLLRRIRGFLKNKQW
ETRVAAAKAVSFICEGIHHATVADIARLEGISLEDAAAGADKLAAVKAEPNANPGDDDSD
ADVNLKFDEFDIVGVLDTAAPLLASKVGDFDASTADDAKLTKKERLRLAKQALKERLGMA
VKDDGDTSGVKREEGTRALDVTKFVDVDDLVGEDDVEDKAAVKVEENRVDAADLSQLSAR
ERNRLKRKQKRAARDDAEGAAAAAPASKKAKKGGEDAALAAAEAAEEEEEAAEVEAGAWP
LTRTCESLAYSLFAARWEERHGAAAALREILRHHADAAAVLKPPARTTSLPPSTAAVAAK
SNGAWLEDMAVRLLCLLSLDRFGDYVGDGVVAPVRETGAQALGAGLLPLPPPAVEAVVRA
VLVLLRRGEWEVRHSALLALRYVLAARDTLAPRLLPAALPAAVTALDDKDDDVRGAAAEA
LLPAARHLPSHQDFPKLLSALWGLLRRLDDPDLLTSPSNVPIMRLISALYALPETRAVPP
AGPGSSLKDVVPSVFPFALHPIASVRIAVWRTLRRLMSDAELRAGWISDASVTAPMLRLL
YQAILLEEDSETASEAQGAWEDAVAAANVGTVAAAVKANVEAWCTKAATAAGSRPDPKLL
FVVSLGDAVGQISGAHERAPTSTSEWTVASVGRLRAVRALSQLAKVLCGSGDAAAAEAAK
TLEAQVIRLMAAPKATWRMTGAHLLAQWLDAIPEGATKPPLEAPGARLGELLSNTNPAYP
SLPSASPYAEVLGFQERVKTEATGLLRAAGQGGVQLTTSEVPSPAAEGFGAEHAGTLAAA
VPQVRATKGAAQGPAGVAIESARSKLLASAAYLKGEETRLHSHVLSAAAGAAVAFGALPP
KLNHLIQPLVRSIRGETDRLLQRRSARALACLIKLANARTPSPVPKIVQNIIGFACADPL
ETPRADGGDLAAQQAAAAAAAATAAAAAAAGSGDSELTEAAVARRGAEATLLELSNVFGE
SLFDALPRLWELMAGPLTSAPTPQSVIDGAQVLKVLGPNVHPSLQDKVLALIPAVFDAAV
NGGEALQKTSAGALAALAKAVPSKVIANLLALVVPALEDSGEADSATGKRRGAAAVASAL
VTDLGAALAPYCVLMLVPLMGRMSDPVPVVREMATKSFASLVPLLPLARGRAPPPELSAE
QVKRSENDGAFLEALLDNSKVEDFELPFKCNRVLRPYQQEGVNWLAFLRRFKLHGALCDD
MGLGKTLQSTCILAATIVERKKAGLPHVPALVVCPPTLVGHWAHEINQYVAEDVLRPLEY
HGQPGDRAKLQPDAFSGKYDVIIMSYDSLRSDAAAMVDGKSYSYCILDEGHAIRNPKARI
TQAVKKVRAEHRLLLSGTPIQNDVVELWSLFDFLMPGFLGTEREFKQSYGIASARSVAAK
KGGGLTEQGALATGKLHKQVMPFVLRRTKDEVLKDLPPKIIQDIYVDLTPHQKHLYDAFE
GSSANAEITNVISGGGESASGAATHVFQALQYLRKLCSHPRLVTEGDGKKGKKAKPTAET
MSPKFMALKQILLDCGIGEDPLAEKDPDQKQESSGHRVLIFSQLKSLLDLVEDELFGHLL
KGVSWLRLDGSVAPTARFDVVRKFNADPSIDVLLLTTHVGGLGLNLTSADTVVFLEHDWN
PQKDLQAMDRAHRLGQKRTVNVFRLLTKGTLEEKIMGLQRFKLDVANAVVNTDNMSLSAM
DTGQMLELFTADKGDKSGEKKDAGGENRAAGAAAEAVTGGLKGALAGLEELWDENQYKEE
FALDGFIKSLNKKE
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagggcggtggcagtcgcctcgataggctgctcaggctcatcgaggcgggt
tcgacccctgcggcgaggaatgaggcggctcgacagattggagagatcgcgtcgcaccac
cccaatcagctcccgaacctgctgcggaggatccgtgggttcctgaagaacaagcagtgg
gagacccgcgtcgccgccgccaaggctgtgtcgttcatatgcgaggggatccaccacgcc
acagtcgcggacatcgccaggctcgaggggatctccctggaggacgccgcggcgggtgca
gataagctcgcggcggtcaaggccgagcccaacgccaatcccggggacgacgactcggac
gccgacgttaacctcaaattcgacgagttcgacatcgtcggggtcctggacaccgccgcg
ccgctgctcgcgtccaaggttggagactttgacgcgtcaaccgccgacgacgccaaactc
accaagaaggagaggctcagactggccaagcaggcgctgaaggagaggcttgggatggcg
gtaaaggacgacggggacacgagcggcgtcaaacgagaggaagggacccgcgcgctggac
gtcaccaagtttgtggacgtggacgatctcgtcggggaggatgacgtggaggacaaggcg
gcggtcaaagtcgaggaaaacagggtcgacgccgcggacctgtcgcagctgagcgcgagg
gaacgtaacaggctcaagcgtaagcagaaacgcgcggcgagagacgatgccgaaggagca
gccgcggcggcgcccgcgtccaagaaggcgaagaagggcggcgaggatgcggcgctcgcc
gcggctgaggctgccgaggaggaggaggaggctgctgaggttgaggccggcgcttggccg
ctcaccaggacctgtgaatcgctcgcgtactctctgttcgccgcgcggtgggaggaacgt
cacggcgcggccgccgcgctcagggagatcctcaggcatcacgcagacgccgcggctgtt
ctcaaaccaccggcgaggactacgtcgctccctccttccaccgccgccgtcgccgccaaa
tcaaacggcgcgtggctcgaggacatggcggtgcgtctgctgtgcctgctctccctcgat
agattcggagattacgtcggcgatggggtggtcgctcccgtgcgcgagaccggcgctcag
gctctgggcgcggggctccttccgcttccccccccggcggttgaggctgtcgtgcgcgcg
gtgctggtgctgttgcggcggggcgagtgggaggtgcgacactcggcgcttctcgcgttg
cgatacgtgctcgcggcgagggacacgctcgcgccgaggctccttcccgcggctctaccg
gcggcggtcaccgcgttggacgacaaggacgacgacgtcaggggcgccgcggcggaggct
ctccttcccgcggctaggcaccttccctcgcaccaggatttccccaagctgctcagcgcg
ctgtggggcttgctgagacgcctggacgacccggacctgctcacgtccccgtccaacgtg
ccaatcatgcgactgatctccgcgctgtacgcgctacccgagacgagggcggtgccaccc
gcgggaccgggcagttcactcaaggatgtcgtcccctccgtgttcccctttgcgttacat
cccatcgcttcggttcgaatcgcggtgtggcgcacgctccgtcggctgatgagcgacgcg
gagctgcgcgcgggttggatctcggacgcgagcgtcaccgcgccgatgttgaggctgttg
taccaggccatcctgctcgaagaggattcggagacggcgtccgaggcgcagggggcgtgg
gaagatgcggtggccgcggcgaacgtcgggaccgtcgccgccgcggtcaaggcgaacgtc
gaggcgtggtgcaccaaggcggcgacggcggcgggatctcgcccggatccgaaacttttg
tttgtggtatcgctgggcgacgccgtgggtcagatatccggcgcgcacgagcgcgccccg
acgtccacgagcgagtggaccgtcgcgagtgttggtcgcctcagggcggtgcgcgctctc
agtcagctggcgaaggttttgtgcgggtccggcgacgccgccgcggcggaggcggcaaag
accctcgaggctcaggtgattcgtctcatggccgcgcccaaggcgacgtggcgcatgacc
ggggcccacctgctcgcgcaatggctcgacgccatacccgagggcgcgacaaaacccccg
ctcgaggctccgggcgccaggctcggcgagctcctctccaacacgaaccctgcctatccg
tcgctgccgtctgcttcgccgtacgccgaggttttgggtttccaggagcgagtcaagacg
gaggcgacggggttactgagagccgcgggacaggggggtgtccaactcacgaccagtgag
gtgccctcaccggcggcggaggggttcggggcggaacacgcgggcacgctcgccgcggct
gtgccacaggtgagggcgacaaaaggtgcggcgcaaggacctgctggagttgccatcgag
tccgcgcgcagcaaacttctcgcttctgcggcgtacctcaagggagaggagacacgactt
cacagccatgttctctccgccgctgctggagctgccgtcgcctttggagcactgccgccc
aagctaaaccacctgattcagcccctagtgcgcagcatcaggggagaaaccgaccgactg
ctgcaacgcagatctgcgagggcgctggcgtgtctcattaaactcgccaacgcgcgcact
ccttcgccggttccaaagattgtccagaacatcatcgggtttgcttgtgccgacccgctt
gagacccctcgcgctgacggcggcgacctcgcggcgcaacaagctgccgccgccgccgcc
gccgcgactgccgctgccgctgcggcggcaggaagcggtgatagcgagctcacggaggcg
gctgtggcgaggcggggcgctgaggcgacgcttctggaactctccaacgtctttggcgag
agcctctttgatgctctgccaagactgtgggagctcatggcgggtcccctcacgtcggct
cccacgccccaatcagtcatcgatggcgctcaggtgcttaaggtcctcggtccgaacgtc
catccgtccctccaggataaggtgttggcgctgatccccgccgttttcgacgcggctgtc
aacggcggcgaagctctgcagaagacatcggctggtgcgctcgccgccctcgcaaaggcg
gttccgtccaaggtaatcgccaacctgctcgcactcgtggtccccgcgctggaggatagt
ggtgaagcggattcggccaccggtaagaggcgcggcgcggcggcggtggcgtcagctctg
gtgactgacctcggcgccgcgctcgcgccgtattgcgttctgatgctggtgccgctgatg
ggtagaatgagcgacccggtgccggtggttagagaaatggccaccaagtcgttcgcatcc
ctggtgcctctactacctctcgcgcgtggccgtgcgcccccgccggagctttccgcagag
caggtgaagcgaagcgagaatgacggagctttccttgaggcgctcctggacaacagcaag
gttgaggactttgagctgccgttcaagtgcaaccgcgttctgcgaccgtaccagcaagag
ggtgtcaactggctcgcgttcctgcgcaggttcaagcttcacggcgctctgtgcgatgac
atgggcctaggaaagacgcttcagtccacctgcatcctcgcagcgaccattgtcgagcgc
aagaaagcaggtttgccgcacgtccccgcgctggtggtgtgcccgccgacactcgtcggt
cactgggcgcacgagatcaaccagtacgtcgccgaggacgtgctgcggccactggagtac
cacggtcagccgggtgatcgtgctaaactgcagcccgacgctttctccgggaagtacgac
gtgatcatcatgtcctatgactcgcttcgatcggacgccgcggctatggtggatggcaag
tcgtacagctattgcatcctggatgagggccacgccattcgaaaccccaaagccaggatc
acgcaggcggtgaagaaggtgagagcggagcacagacttcttctgtcgggaacacccatt
cagaacgacgtggtggagctctggtccctgtttgacttcctcatgcccggattcctgggt
accgagagggagttcaagcagtcctatggcatcgcctcggcgaggagcgttgcagcaaag
aagggcggaggattgaccgagcagggcgcgctcgccaccggcaagctccacaagcaggtc
atgcccttcgtgctcaggcgcaccaaggatgaggtgctcaaggatctgccccctaagata
attcaggacatttacgtcgacctcaccccacaccagaagcacctgtacgacgcattcgag
ggatcctcagcaaatgccgagatcactaacgtaatcagcggcggcggcgagagtgcgagc
ggcgcggcgactcacgtctttcaggcactccagtacctgcgcaagctctgctcgcaccct
cggctcgtcaccgagggtgacggcaagaaggggaagaaggccaaacccaccgcggaaaca
atgtcacccaagtttatggcgttgaaacagattttgctggattgcggcatcggggaggac
ccactcgcggagaaggacccggaccagaagcaagagtcctccggccaccgcgtgctgatc
ttctcgcagctcaagtcgttgctggaccttgtcgaggacgagctcttcggtcacttactg
aagggtgtgtcctggctcagacttgacggcagcgtcgcgcccaccgcgaggttcgacgtg
gtgcgcaagttcaacgcggatccttccatcgacgtcctcttgctcaccacgcacgtcggc
ggcctcggtctcaatctgaccagcgcagatactgtggtgtttctggagcacgactggaac
ccgcagaaggacctgcaggcgatggacagagcgcacaggctcgggcagaagcgcacggtg
aacgtgttccgccttctgaccaaggggacgctcgaggagaagatcatgggcctgcagcgg
ttcaaactcgacgtcgcgaacgcggtggtgaacacagataacatgtccctgtccgcgatg
gacactggtcagatgctggagctattcacggctgacaagggcgacaagtctggggagaag
aaggacgccggcggtgagaacagggcggcgggtgcggcggcagaggcggtgacgggcggg
ctcaagggcgcgcttgcgggcttggaggagctctgggacgagaaccagtacaaggaagag
tttgccttggacggtttcatcaagagtctaaacaagaaagagtga
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