KEGG   Micromonas commoda: MICPUN_64159
Entry
MICPUN_64159      CDS       T02695                                 
Name
(RefSeq) splicing factor
  KO
K12857  Prp8 binding protein
Organism
mis  Micromonas commoda
Pathway
mis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MICPUN_64159
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mis03041]
    MICPUN_64159
Spliceosome [BR:mis03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    MICPUN_64159
 Complex C
   U5 SnRNP specific factors
    MICPUN_64159
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_EML WD40_MABP1-WDR62_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_RIG_2nd eIF2A Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st RMC1_N WD40_RFWD3
Other DBs
NCBI-GeneID: 8248936
NCBI-ProteinID: XP_002506216
JGI: MicpuN3_64159
UniProt: C1EHA8
LinkDB
Position
14:complement(join(565769..566548,566662..566997))
AA seq 371 aa
MGGGGAGKRKTRAAGEEGVDADDDPENLALQVVAQKPKTVDDRAVSIVGVPSQQPHPKPG
MNRTSSLDAPIMLLEGHGDAVNSIKFSPDGATVASCGADKTVLMWNVRGDCENYMMMQGH
KNSVLELHWTADGDNILTCSPDKTLRLWDATTGESVKCMKGHQSFVNACSAAPKGKPLCV
SGSDDGTAKLWDFRRKGEVATFADRFQVTAVAFDAEGDRFFSGGLDNVLKCWDIRNDAEP
YMVLPGHTDTITGIAVAPDGSHVLTNAMDCTLRAWDVRSYAPEDRCVKYFVGHQHNFEKG
MLKCGWSPDGAKVTAGSACRNVFVWDFDSRRVLYKLPGHEGAVNEVTFHPTEPIIGSAGS
DGKIYLGELAD
NT seq 1116 nt   +upstreamnt  +downstreamnt
atgggaggagggggagcagggaagcgcaagacccgcgccgcgggcgaggagggcgtcgac
gcggatgacgacccggagaatctcgcgctgcaggtggtggcgcagaagcccaagaccgtg
gacgaccgcgcggtgtcgatcgtcggcgtgccctcgcagcagccccatccgaagccaggc
atgaaccgcacgtcctcgctcgacgcgcccatcatgctgctggagggacacggggacgcg
gtcaactccatcaagttctcaccggacggcgcgacggtggcgtcgtgcggcgcggataag
acggtgctcatgtggaacgtccgcggcgactgcgagaactacatgatgatgcagggtcac
aagaactcggtgctggagctgcactggaccgcggacggcgataacatcctcacgtgctcg
ccggacaagaccctgaggctctgggacgccaccacgggcgagtccgtgaagtgcatgaag
gggcaccaatccttcgtcaacgcgtgttcggcggcgcccaaggggaaaccgctgtgcgtg
tcgggctccgacgacgggaccgcgaagttgtgggacttcaggcgcaagggtgaggttgcg
acgttcgcggacaggttccaggtgacggcggtggcgttcgacgcggagggtgacaggttt
ttcagcggcggcctcgacaacgtcttaaagtgctgggacattcgcaacgacgccgagcct
tacatggtcctcccggggcacaccgacaccatcacgggcatcgccgtcgcgcccgacggg
tcgcacgtgctcaccaacgcgatggactgcacgctgcgcgcgtgggacgttcgatcgtac
gctccggaggataggtgcgtgaagtatttcgtcggacaccagcacaacttcgagaagggg
atgctcaagtgcggctggtcgcccgacggcgcgaaggtgaccgcggggagcgcgtgcagg
aacgtgttcgtgtgggacttcgacagcaggcgggtgctgtacaagctgccgggtcacgag
ggggcggtgaacgaggttacgtttcacccgacggagccgatcatcggaagcgccggatcc
gacgggaagatctacctcggcgaactcgcagattga

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