Micromonas commoda: MICPUN_65501
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Entry
MICPUN_65501 CDS
T02695
Name
(RefSeq) predicted protein
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
mis
Micromonas commoda
Pathway
mis03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
MICPUN_65501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mis03009
]
MICPUN_65501
Ribosome biogenesis [BR:
mis03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
MICPUN_65501
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_2nd
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Utp12
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
DSE1_N
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR41
Beta-prop_TEP1_C
ASA1
Beta-prop_NOL10_N
Beta-prop_IP5PC_F
CFAP251_N
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_DCAF4
Beta-prop_Nup120_160
PAC11
Beta-prop_EIPR1
Beta-prop_WDR19_1st
PEP5_VPS11_N
WDR54
Beta-prop_SPT8
TRM82_WD
DNAI3_WD
Beta-prop_HPS5
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
8248418
NCBI-ProteinID:
XP_002505488
JGI:
MicpuN3_65501
UniProt:
C1EGB1
LinkDB
All DBs
Position
13:join(437398..438128,438192..439878,440047..>440479)
Genome browser
AA seq
950 aa
AA seq
DB search
MVKAYLRYEQARAFGVVASPEAPPVYDDTGKHLVTAALERLAVWDVRRGVEAKSLLPPPR
ESGALPAVTRIARAEGSDLVAAGHSDGTIRLWSLDDASTDVLLKGHRSEVTALRFNASGS
MLVSGGKDTNVVVWDVVAETGLCRLRGHKDQVTDAVFAEADATAGGGAPSTGSSGVRLVT
CSKDATVKVWDLDTQHCAQTVAALGAECWSMDVDPTGRRLAVGTSDDRLHLFAVNRGYDD
GEEEADENGARVPMTQAQKAASIADASNLLTPVGHVPRSDKSRVSHVRFDRAGGGLLGVQ
TVGRAIEVWRVRSASEKAKRLKRKQKRRREKEKLRAKERNAEEDQTETAWDKDAEGEGLT
AADELELATVVRPKAKTRGFAWAPRQRRRPGIRAVVAVLLDNNAFEEWEIGQDADGVVAE
EPTKIRTIDAQGHRADVRALALSPDDGTLLTCSNKGVKVWNPEDGACLRSVDGGYGLCAA
FAPGGRHAVVGTKSGALEIVDTQAGVQLSGMRDAHAGAVWGVALLPDGSGFVTASADKTV
KFFEWRLVDVEDDEDEGGEGRRELGIAHVKTLQMAEDVLSVKVTPDGKLLSVSLLDNTLK
VFFVDSLKFFLSLYGHRLPALCHDVSSDSQLLASGGADKNIRIWGLDFGDCHRSVFAHED
SVTSIAFVPKTHYLFSTGKDRLVKYWDADKFEPLLTLQGHHASAWCVALSTRGEFAVTGG
HDRAIRVWERTDEPFFVDEEKEKRLESLLEEGGAEDDGDDDRIAAAARENASANGGVAPA
GAEAGMAGRKTLETLTAADQIVDALDEGAEDDDDDDAADAVVVNSASLSAYGYNPSYPSG
LPPNPLLMGQSPERYALSAIEKVRAADLEQAVLALPFSSALTLLDYLGGWLEAGEKTELT
CRLASLIVRLHYVQLGATHRARAVLLRLRPLLRKRAKELRDLMGFNLAGM
NT seq
2851 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaggcgtacctgcgctacgagcaggcgcgtgccttcggcgtcgtcgcctccccc
gaggcgccgccggtctacgacgacaccggcaagcatctggtgacggcggcgctggagcgc
ctcgccgtgtgggacgtgcgtcgcggtgtcgaggccaagagcctcctccctccgccgcgc
gagtccggcgcgttgcccgcggtgacgcgcatcgcccgtgcggagggtagcgacctcgtc
gcggccggtcactccgacggcaccatccgactctggtccctggacgacgcatccaccgac
gtgctcctcaaggggcaccgctcggaggtgaccgcgctgcggttcaacgcgagcggctcg
atgctggtgtcgggaggcaaggacaccaacgtggtggtatgggacgtcgtcgcggagacg
ggtctgtgccgcctgcgcggacacaaggatcaggtcacggacgccgtcttcgccgaggcg
gacgccaccgccggcggcggtgcgccatccaccggatcctcgggcgtccggctggtgacc
tgcagcaaggacgccacggtgaaggtgtgggatctggacacccagcactgcgcgcagacc
gtcgcggcgctcggcgcggagtgctggagcatggacgtggacccgaccggcaggcggctc
gcggtgggaacctccgacgacaggctccacctcttcgccgtcaaccgcgggtacgacgac
ggagaggaagaggcggacgagaacggcgccagggttcccatgacgcaggcgcagaaggct
gcctccatcgcggacgcttcgaacctgttgacccccgtcgggcacgtgccgcgatcggac
aagtcgcgggtgtcccacgtgaggttcgacagagccggcggcggtctgctcggcgtgcag
accgtggggcgcgcgatcgaggtgtggcgcgtgcgctccgcgtcggagaaggcgaagcgg
ctcaagcgcaagcagaagcgccggcgcgagaaggagaagcttcgcgccaaggaacgaaac
gccgaggaagatcagacggagacggcttgggacaaggacgccgaaggcgaggggctcacc
gcggcggacgagctcgagctcgcgacggtggtccgcccgaaagccaagacccggggcttc
gcgtgggcgccgaggcagcgaagacgtccgggcatccgcgcggtcgtcgccgtgctcctc
gataacaacgcgttcgaggaatgggaaatcggtcaagacgccgacggggtggtggccgag
gaacccactaagattcgcaccatcgacgcgcaaggccaccgcgccgacgttcgcgcgctc
gccctgtccccggacgacggcaccctgctgacgtgctcgaacaagggcgtcaaggtttgg
aatcccgaggacggcgcgtgccttcgatcggtggacggcgggtacgggctctgcgccgct
ttcgcccccggcggtaggcacgccgtcgtcggaacaaaatccggcgcgctggagattgtg
gacacgcaggctggcgtgcaactgtcgggcatgcgggacgcgcacgccggcgccgtgtgg
ggcgtggctctgcttcccgacggatccggctttgtcaccgcgagcgcggacaagacggtt
aagttttttgagtggcgactcgtggacgtcgaggacgacgaggacgagggcggcgagggc
cgacgcgagctgggcatcgcgcacgtgaagacgctgcagatggcggaggacgttctctcc
gtgaaggtcacccccgacgggaagctcctctcggtgtcgctgctggacaacaccctcaag
gttttcttcgtggactcgctcaagtttttcctctcgctctacggccaccggttacccgcg
ctctgccacgacgtgtcgtcggactcgcagcttctggcgtcgggcggtgcggacaagaac
attcggatctggggtctcgatttcggcgactgtcacaggtcggtgtttgcccacgaggac
agcgtcacgtcgattgcgtttgtgccaaagacccactaccttttcagcaccggaaaggac
cgcctcgtcaagtactgggacgccgataagttcgagccgttgctcacgctgcagggccac
cacgcgtcggcgtggtgcgtcgcgctgtcgacgcgcggcgagttcgccgtcaccggcggt
cacgatcgcgcgattcgcgtgtgggaacgaacggacgaacccttcttcgtggatgaagaa
aaagagaagcgtctggaatcccttctggaggagggcggcgcggaagacgacggcgacgac
gacaggatcgccgccgccgcgagggaaaatgcgagcgccaacggcggcgtcgcgcccgcg
ggggcggaggctggcatggcggggcgaaagacactcgagacgctcaccgccgcggatcaa
attgtcgacgctctcgacgagggggctgaggacgacgacgacgatgacgccgccgacgcg
gtcgtggtcaacagcgcatccttatccgcgtacggatacaatccctcgtatcccagcggc
cttcctcccaatcccttgctcatgggtcagagccccgagcggtacgcgttgtctgcgatc
gagaaggttcgcgccgcggatctggagcaggctgtgctggcgcttccattttcatccgcg
ttgactcttttggattacctgggcggctggctcgaagctggcgagaagacggagctcacg
tgcaggctcgcgtcgctcatcgtccgcttacactacgttcagctgggcgccacgcacagg
gctcgcgcggtgctgctgaggctgaggccgctgctgaggaagcgagcgaaggagcttcgc
gacttgatgggttttaatctcgcggggatga
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