Micromonas commoda: MICPUN_65643
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Entry
MICPUN_65643 CDS
T02695
Name
(RefSeq) predicted protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_65643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_65643
03012 Translation factors [BR:
mis03012
]
MICPUN_65643
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MICPUN_65643
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
MICPUN_65643
Translation factors [BR:
mis03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
MICPUN_65643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
OB_NTP_bind
DEAD
HA2_N
AAA_19
AAA_22
MoCF_biosynth
Cas3-like_C_2
AAA_16
ATPase
T2SSE
nSTAND3
Motif
Other DBs
NCBI-GeneID:
8242345
NCBI-ProteinID:
XP_002500723
JGI:
MicpuN3_65643
UniProt:
C1E2V9
LinkDB
All DBs
Position
3:join(1572995..1573599,1574197..1574935,1575056..>1575793)
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AA seq
694 aa
AA seq
DB search
MRETRDALPIAKIKAELCEALRTSPVVVVSGGTGSGKSTQCPQYILEDAIKRGVGPDTRI
IVTQPRRIAAVSVAERVASERGERAGNSVGFSVRLHGCAPRDEGASVEFVTTGVLLRRLM
RDPGLRGVSHVMIDEVHERDINTDFLLVLLRALLRKRPELRVVLMSATLDAESFSDYFAR
RGGLDWGEDGKARSNVLDDSFAQAARRARKMSGGGGGGGKRGGIADKREREELVVALAAE
VAAQVSAAELAKGRKGSVLVFLPGWDEIKEAMKTLESLPAEQYDSLQVIPLHSQVPQEEQ
QLVFNPAPPGKIKVILATNIAESSVTIDDVLAVVDSGLVREMSYNPESAMSTMGTVSTSR
ASATQRTGRAGRVAPGVCYRLYSRAMFEAMPERPTPEIQRTALEATCLQTCSMTNSGVQA
FLAEAMDPPATETVTLAMERLKTLGAIAEVLTPLGSLLSQLPLDPATGRMLIMGVVTQCL
DPVLTAAACMSSRDPFIVPTGMRDEAQRARRSFSERSDHLAVLRAYAEWRAVLAEEGFDG
ACQWARDNFLSIQGLQNLTSLRSQLLDELVRTGLVRRDDLGYDRRNRELRGDAAVNRHAG
NEPLTLAVLTTGLPGNLAARRSMAHFGVMRTRLEENAGLHPASVSFARAPPKRRSELAAL
PQWFLYREMVLSSQVFLRDCSAVNPEQLVLFGGT
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcgggagacccgcgacgccctgcccatcgcgaagatcaaggcggagctctgcgaggcg
ctgcgaacgagccccgtggtggtggtgtccggcggtaccggcagcggtaagtccacccag
tgcccgcagtacattctcgaggacgccatcaaacgcggcgtcggtccggatacccgaatc
atcgtcacgcaaccgcgacgcatagccgccgtctccgtcgccgagcgagtcgcttcggag
cgcggcgagcgcgcgggtaactcggtcggtttcagcgtgcgtctgcacgggtgcgcgccg
agggacgagggcgcgagcgtcgagttcgtgacgacgggcgtgctgctccggcggttgatg
cgggatccgggcctgcgaggcgtgtctcacgtcatgatcgacgaggtgcacgagcgcgac
atcaacaccgactttttgctggtgctcctgcgcgcgctgcttcgcaagcgcccggagctc
agggtggtgctcatgtccgccacgctcgacgccgagtcgttctcggattacttcgccagg
cgcggcggcctggattggggcgaggacggcaaggcgcggtcgaacgttttggacgattct
ttcgcgcaagccgcgaggcgcgctcgaaagatgtccggggggggaggaggcggagggaag
cgcggcggcatcgcggacaagcgcgagcgcgaggagttggtcgtcgcgctcgccgcggag
gttgccgcgcaggtctccgccgcggagctcgccaagggcaggaaaggctcggtgctcgtg
ttcctcccgggctgggacgagatcaaggaggcgatgaagacgctcgagtcgttgccagcg
gagcagtacgactcgcttcaggtgattcccctgcactcgcaggtgccccaggaagagcag
cagctggtgttcaacccggcgcccccgggaaagatcaaggtgatcctcgccaccaacatc
gccgagtcgtccgtcaccatcgacgacgtcctcgccgtcgtcgacagcggcttggtcagg
gagatgagctacaacccggaatcggcgatgagcaccatgggcacggtgtccacgtccagg
gcgtccgcgacgcagcgcaccggccgcgccggccgcgtcgccccgggtgtgtgttacagg
ctctactccagggcgatgttcgaggcgatgcccgaacggccgacgccggagattcaacga
accgcgctggaggcgacgtgcctgcagacgtgctcgatgaccaactccggggtccaggcg
ttcctggcggaggccatggatccgcccgcgacggagacggtgacgctggcgatggagcgg
ttgaagacgctgggcgccatcgcggaggtgctcaccccgctgggcagcctgctctcgcaa
cttccgctggatcccgccaccggtcgcatgctcatcatgggggtggtcacgcagtgcctc
gatccggtgctgaccgccgcggcttgcatgtcctccagggatcccttcatcgtccccacc
gggatgcgcgacgaggcgcagcgcgcgcggcggtcgttcagcgaacgatccgaccacctc
gcggtcctgagggcgtacgcggagtggcgcgccgtgctcgccgaggagggattcgacggc
gcgtgccagtgggcgagagacaactttttatcgatccagggcttgcagaacctgacgtcg
ctccggtcgcagctcctggacgagctcgtgcgcaccgggctcgtgcggagggacgatctc
gggtacgatagacggaacagggagctgcggggcgacgccgcggtcaacagacacgcgggt
aacgaaccgctcacgctggcggtgctcacgacgggcctgccgggaaatctcgccgcccgc
cgatcgatggcgcacttcggagtcatgcgcacgcgtctggaggaaaacgcggggctgcat
cccgcgtccgtctcgttcgccagggcgccgcccaaacgtcgcagcgagctcgccgcgctg
ccgcagtggttcctctatcgcgagatggtgttgtcgtcgcaggtgtttttgagggactgc
agcgcggtgaacccggagcagctcgtgctgttcgggggcacg
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