KEGG   Micromonas commoda: MICPUN_66469
Entry
MICPUN_66469      CDS       T02695                                 
Name
(RefSeq) predicted protein
  KO
K15542  polyadenylation factor subunit 2
Organism
mis  Micromonas commoda
Pathway
mis03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    MICPUN_66469
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mis03019]
    MICPUN_66469
Messenger RNA biogenesis [BR:mis03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     MICPUN_66469
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_IFT140_1st EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR41 WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_SPT8 PEP5_VPS11_N Tricorn_2nd Beta-prop_DCAF12 Beta-prop_IFT122_2nd WD_LRWD1 PROPPIN Beta-prop_NUP159_NUP214 Beta-prop_VPS8 Beta-prop_WDR11_2nd Beta-prop_RIG_1st Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 8246723
NCBI-ProteinID: XP_002508719
JGI: MicpuN3_66469
UniProt: C1FID6
LinkDB
Position
10:complement(join(<390866..391897,392070..>392129))
AA seq 364 aa
RRPVQRRTVDYTATTVRHLENRVYQKHPWDNEMLQATSGAMLDFLPPVAYPHVPATSFAT
KFVHVSTNKIRTPVRVVTFMPDGRRLLSCSQNGEFTLWNGMSFNFETILQAHDCAIQAAC
WSKNENWLLTGDDAGRIKYWQTNLNNLKSVNAHTEPVRGVSFAPTDLKFCSCSDDTTVRV
FDFARAAPVHTLSGHGGDVKCVDWHPHKGLLASGGKDSLTILWDAREGKKAVDIHAHKNQ
VTCLKWNANGNWLATGCKDQTIKVFDIRTMKELENFRGHTRDVTAVVWHPQHETLLTSGG
YDGTIMYWIVGRGQEECAAQVKGGHEAAIWSMTWHPAGHILCSGSNDNTTKFWCRNRPGE
VPRD
NT seq 1092 nt   +upstreamnt  +downstreamnt
cggcggcccgtgcagcgtcgaaccgtggactacaccgccacgaccgtgcgacatctcgag
aaccgcgtgtaccaaaagcacccctgggacaacgagatgctgcaggcgacgtccggcgcc
atgctggactttctcccgccggtcgcttacccgcacgtccccgccacgtccttcgccacc
aagttcgtgcacgtctcgacgaacaagatccgaacgccggtcagggtggtgacgttcatg
cccgacgggcggcggctgctgtcgtgctcgcagaacggggagttcacgctctggaacggg
atgagcttcaactttgagacgattctgcaggcgcacgattgcgcgatccaggcggcgtgc
tggagcaagaacgagaactggctgctgacgggcgacgacgccggccgcatcaagtattgg
cagaccaacctgaacaacctgaagtccgtcaacgcgcacacggagcccgtgcgaggggtc
tcgtttgcgccgacggatctaaagttttgcagctgctccgacgacacgacggtgcgcgtg
ttcgactttgccagggcggcgccggtgcacacgctgtcgggacacggcggcgacgtcaag
tgcgtggattggcatccacacaagggcctgctcgcgtccgggggtaaggactcgctgacg
atcctgtgggacgcgcgggagggcaagaaggctgtcgacatccacgcgcacaagaaccag
gtgacgtgtctcaagtggaacgccaacggcaactggctcgccaccgggtgcaaggaccag
acgatcaaggtgttcgacatacggaccatgaaggagttggaaaacttccggggacacacg
agggacgtcaccgccgtggtgtggcacccgcagcacgagacgctgttgacgtcgggcggg
tacgacggcaccatcatgtactggatcgtcggtcgcggccaagaggagtgcgcggcgcag
gtcaagggagggcacgaggcggcgatctggtcgatgacgtggcacccggcgggccacatc
ctgtgctcggggtccaacgacaacaccaccaagttctggtgcaggaacaggccgggggag
gtgccgagggac

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