Micromonas commoda: MICPUN_75328
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Entry
MICPUN_75328 CDS
T02695
Name
(RefSeq) predicted protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_75328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_75328
03400 DNA repair and recombination proteins [BR:
mis03400
]
MICPUN_75328
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MICPUN_75328
Messenger RNA biogenesis [BR:
mis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MICPUN_75328
DNA repair and recombination proteins [BR:
mis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MICPUN_75328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
8242215
NCBI-ProteinID:
XP_002500603
JGI:
MicpuN3_75328
UniProt:
C1E259
LinkDB
All DBs
Position
3:join(<1057487..1057838,1057890..>1058707)
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AA seq
390 aa
AA seq
DB search
LSKYYGHADFRPGQLEVVAATVQGRDSCVYWSTGSGKSLCYQLPALHTGKTSLVVSPLIS
LMNDQVTHMNNTAGADEGDLAAFLGSSQTDKSVEERALRGDFRVVYVTPEKLVGDIDDMA
RDGKLGLVAVDEAHCLSQWGHDFRKSYRGLTLIRTQLSPNGEVPVMALTATAVEKVREDI
KDVLALKRPHVARNSCDRTNLRILVSKKRGGAADHLHIYERCRDAKGSVVVYCVTKRDAE
DIATVLKNKFATQNIAAGVEVYHAGLAMSRRDATHKGFLTGSVKVVVATVAFGMGIDKPD
IRLVMHYGAPKTMEEYYQQVGRAGRDGLPSDVEMIYGDGDFSRYSDEFYVGKLDAAARKT
QKESTDALERFSRSREVCRRASILAHFGES
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ctgtccaagtactacggccatgccgacttcaggcccgggcagctcgaggtggtcgccgcg
accgtccagggcagggactcgtgcgtgtactggtccacggggtcgggcaagtctctgtgt
taccagcttcccgctctacacaccggcaagacctcgttggtggtatcgccgctcatatca
ctcatgaacgaccaggtgacgcacatgaacaacaccgccggcgcagacgaaggggatctc
gctgcgttcctgggttcctcgcagactgacaagtccgtggaggagcgagcactccgaggc
gatttcagggtggtgtacgtgaccccggagaagctcgtgggcgacatcgatgatatggca
agggacggtaagctgggtctggtcgcagttgacgaggcgcactgcctgtcgcagtggggc
cacgactttcgcaagtcgtaccggggcctgacgctgatccgaacgcagctgtcgcccaac
ggggaggttcccgtcatggcgctcactgcgactgcagtggagaaggtacgtgaagacatc
aaggacgtgctggctctgaagcgaccgcacgtcgcccggaacagctgcgacaggaccaac
cttcgcatcctcgtgagcaagaagcggggcggagctgcggaccacctacacatctacgag
aggtgccgcgacgcgaaagggtcggtagttgtttactgcgtcaccaagcgagacgcggag
gatatcgccaccgtgctcaaaaataagttcgcgacccagaacatcgccgctggcgtcgag
gtttaccacgccggactggccatgtcgaggagggacgcgacgcataagggtttcctgacc
ggcagcgtcaaggtcgtggtcgccaccgtggcgttcggcatgggcattgataagccggac
atccggttagtcatgcactacggcgcgcctaagacgatggaggaatactaccagcaggtt
ggccgcgcaggtcgagacgggctgccgtccgacgttgagatgatctacggggacggggac
ttttcgagatacagcgacgagttttacgtgggcaagctggacgccgcggcgaggaaaacc
cagaaggagagcaccgacgcgctcgaacgattctcaaggtcgcgggaggtgtgcaggcgc
gcgagtatcctggcccacttcggcgagagc
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