KEGG   Micromonas commoda: MICPUN_77396
Entry
MICPUN_77396      CDS       T02695                                 
Name
(RefSeq) predicted protein
  KO
K12880  THO complex subunit 3
Organism
mis  Micromonas commoda
Pathway
mis03013  Nucleocytoplasmic transport
mis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MICPUN_77396
  09122 Translation
   03013 Nucleocytoplasmic transport
    MICPUN_77396
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mis03019]
    MICPUN_77396
   03041 Spliceosome [BR:mis03041]
    MICPUN_77396
Messenger RNA biogenesis [BR:mis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     MICPUN_77396
Spliceosome [BR:mis03041]
 Complex C
  Other components
   EJC/TREX
    MICPUN_77396
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    MICPUN_77396
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40 WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 ANAPC4_WD40 EIF3I Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_WDR35_TULP_N Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Tricorn_2nd eIF2A DSE1_N NBCH_WD40 Beta-prop_EIPR1 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_ELP1_1st Beta-prop_Nup120_160 Beta-prop_WDR41 KNTC1_N TRM82_WD WD_LRWD1
Other DBs
NCBI-GeneID: 8250144
NCBI-ProteinID: XP_002507219
JGI: MicpuN3_77396
UniProt: C1FDZ5
LinkDB
Position
1:1106761..1107717
AA seq 318 aa
MSALTFFDGAISREIAGHKKKVHCVAWNLSGRRLASGSVDQSARVWDVEHGTCLGKELEL
KGHSDSVDQVCWDPTSGDRLATVSGDKSLRAWDVRSGSNCVAAINTSGENINLAWHPDGV
TIAIGDREDLVSFVDTRKLRVVSVRKFPFEVNEMRWSPDGDILWVTTGTGTVEVHAWPSS
RKMLSMKAHTAGCYAIDVDPLGRKLAVGGADTLVSMWDTEEYTCLYTVARSGKPVRVVRF
SMGGDFIATGSEEHFIDIADSQTGACAAKLSTGAATNSLAWSPSEHILAYVGDAQPGKID
RHARTSIRIWGVPSGAMA
NT seq 957 nt   +upstreamnt  +downstreamnt
atgagtgcactcactttttttgatggcgctatttccagggaaatcgctggccacaagaag
aaagtgcactgtgttgcctggaacctgtccggacgcaggctcgcgagtggttctgtggac
cagagcgcgagggtgtgggacgttgagcacggcacgtgcctagggaaagaacttgaactg
aagggtcatagcgacagtgttgatcaggtgtgttgggacccgacgagtggcgacagacta
gcgaccgtctcaggggacaaatcgctgcgcgcttgggacgttcgttctggttcaaattgc
gtagccgcgatcaacaccagcggggagaatatcaatctcgcttggcatccagacggggtc
actattgcaattggcgatcgcgaggatttagtttcatttgtggacacgcgcaagctcagg
gtcgtgagcgttcgaaagtttccattcgaagtgaatgaaatgcgttggtccccggacggt
gatatcctttgggtcaccacagggacaggtactgtcgaagtccacgcgtggccatcctcc
cgcaagatgctctccatgaaagcgcacactgccggatgctacgcgatcgatgtagaccct
ttggggaggaaattggctgtcgggggtgcggacacacttgttagcatgtgggatacggag
gaatatacctgtctttacaccgtcgcgaggtcgggcaagccagtgagggtcgtcaggttc
agtatgggcggagacttcattgcaacaggatccgaagaacattttattgacatagcggac
tcacaaactggggcttgtgccgcaaaattatcaacgggggccgcgacgaactcacttgcg
tggtcgccgtcagagcacatcttggcatatgttggggatgcacagccaggcaagattgac
aggcacgcaagaacgtctatacggatctggggagtgccatcgggtgcgatggcatag

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