KEGG   Micromonas commoda: MICPUN_77437
Entry
MICPUN_77437      CDS       T02695                                 
Symbol
CDC48
Name
(RefSeq) cell division cycle protein 48-like protein, expessed
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
mis  Micromonas commoda
Pathway
mis04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    MICPUN_77437 (CDC48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mis03019]
    MICPUN_77437 (CDC48)
   03009 Ribosome biogenesis [BR:mis03009]
    MICPUN_77437 (CDC48)
   04131 Membrane trafficking [BR:mis04131]
    MICPUN_77437 (CDC48)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mis04147]
    MICPUN_77437 (CDC48)
Messenger RNA biogenesis [BR:mis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     MICPUN_77437 (CDC48)
Ribosome biogenesis [BR:mis03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    MICPUN_77437 (CDC48)
Membrane trafficking [BR:mis04131]
 SNARE
  SNARE associated proteins
   Others
    MICPUN_77437 (CDC48)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    MICPUN_77437 (CDC48)
Exosome [BR:mis04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   MICPUN_77437 (CDC48)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_2 AAA_5 AAA_33 AAA_22 AAA_14 TIP49 NPHP3_N RNA_helicase nSTAND3 Mg_chelatase AAA_17 AAA_28 Parvo_NS1 AAA_18 ATPase_2 IstB_IS21 Vps4_C ABC_tran Viral_helicase1 AAA_7 NACHT DUF815 TsaE NB-ARC ResIII AAA_24 Zeta_toxin Sigma54_activ_2 KAP_NTPase Zot UFD1_N1
Other DBs
NCBI-GeneID: 8250478
NCBI-ProteinID: XP_002507162
JGI: MicpuN3_77437
UniProt: C1FDN1
LinkDB
Position
1:join(746772..746871,747012..747238,747297..749435)
AA seq 821 aa
MVDSPDDKSGIRVKKDTSTAILERKKSPNRLVVDEAVNDDNSVVALNLQKMDELQLFRGD
TVLIKGKKRKDTVCIVLADEFCEEGKIRMNKVVRKNLRVRLGDVVSIHQCTDVKYGQRIH
VLPFSDTIEGVSGNLFDVYLKPYFLEAYRPVRKGDTFLARGGMRGVEFKVVETDPAEYCI
VAPDTEIFCEGEPINREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPTLFKTIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN
APAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGMKSRAHIIVMGATNRPNSVDPA
LRRFGRFDREIDIGVPDETGRLEVLRIHTKNMKLDEEVDLEKVSKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEVLDTMAVTNDHFVTALGTSNPSALRETVVEVPNVSW
EDIGGLETVKQELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIANQRGSSSGDAGGA
ADRVLNQLLTEMDGMGSKKTVFIIGATNRPDIIDSALMRPGRLDQLIYIPLPDEKSRLSI
FRANLRKSPLAPDVDVTTLARFTNGFSGADITEICQRACKFAIRESIQRDIEREQASSID
PDAMDNDSTYIDPVPEITKAHFEEAMKFARRSVSDADIRKYQAFSQTLQQSRGFGNDFRF
PDGNNRSNGGGGGDGTADHFGAGDSQLFTSGEAQDDDDLYS
NT seq 2466 nt   +upstreamnt  +downstreamnt
atggtagattcccctgacgataagtctggaattcgcgtcaagaaggacacttcgaccgcc
atcctcgagcgcaagaagtccccaaatcgccttgttgtcgacgaagctgtgaacgatgac
aacagcgtcgtggcgctcaacctccagaagatggatgaactgcagctctttcgcggggat
acggtgctgatcaagggcaaaaagcgcaaagacaccgtttgcatagtactcgcagatgaa
ttttgcgaggagggcaaaattcgtatgaataaagttgttcgcaaaaatctacgtgttcgt
ctgggagatgtcgtgtctatccaccagtgcaccgacgtgaaatacggacaacggattcac
gttttgcctttcagtgatacaatcgaaggagtcagtgggaatttatttgacgtgtactta
aagccctattttcttgaggcctaccgcccggttcgaaaaggggatacgtttcttgctaga
ggaggcatgcggggcgtagagttcaaggttgtcgaaacagacccggctgagtattgcatc
gttgccccggatactgaaatattctgtgaaggtgagccaatcaacagagaagatgaggag
cgactcgacgaagttggttatgatgatgtcggcggtgtgcgaaagcagatggcacagatt
cgagagctcgtggagttacctttacgccaccctactctctttaaaacaattggtgtcaaa
ccgccaaaaggcatccttctttacggacctcctggatcaggaaaaactctcatcgcgcga
gcggtcgcaaatgaaactggtgcattcttctttctcatcaacgggccagagatcatgtct
aaacttgctggtgaatccgagtcaaaccttcgcaaagcttttgaggaagctgagaagaac
gcgccggcgatcattttcatagacgagatcgattccattgcaccgaagcgtgagaaaaca
cagggggaagttgaacgaagaatcgtttcgcaactgcttactttgatggatggcatgaag
tcacgagcccatatcatcgtcatgggcgcaactaaccggcccaattctgttgatccagca
ctgaggcgtttcggtcgcttcgaccgggaaattgatattggcgttcctgatgaaacaggc
cgtctcgaagtgctgcgcatccacacgaaaaacatgaagctcgatgaagaagttgacctt
gagaaagtttcgaaagagacgcatggttatgttggcgctgacctcgctgcactttgtaca
gaagctgcgcttcagtgtattcgagaaaagatggatgtcattgatcttgaggatgaaacg
attgatgccgaggtattagacacaatggcagtgacaaacgatcacttcgtgactgctctc
ggaacttcgaatccatccgcgttgcgagagaccgttgtcgaagtcccgaatgtttcctgg
gaagacatcggtggacttgaaaccgtcaagcaagaacttcaagaaaccgtgcagtaccct
gttgagcatcctgaaaagtttgaaaagttcggcatggcgccatctaagggcgtgttgttc
tatggaccgccaggatgcggcaaaacattgcttgcaaaagcgattgcaaatgagtgtcag
gcaaacttcatatctgtcaaaggccctgagctccttaccatgtggttcggtgaatcagaa
gcaaatgtgagggagattttcgacaaagctcgtcagtccgctccatgcgtgctttttttc
gatgaattggattcgattgccaatcagagaggatccagttctggcgacgctggaggcgca
gctgatcgcgtcttgaatcaacttctcaccgagatggatggtatgggttcaaagaaaacg
gtgtttatcatcggagccaccaatcgtccagacattattgactctgctttgatgcgtcct
ggccgccttgatcaacttatatacatccccctacccgacgaaaagtctcgactttctata
ttcagggcaaacttgcgcaagtcgcctctcgcacctgacgttgacgtgaccaccctcgcg
cgttttacgaatggtttttcaggagcagacatcacagaaatatgtcaacgtgcgtgcaaa
ttcgccattcgcgagagcattcagcgtgacatagagcgagaacaggcttcgtcgatcgat
cctgacgcgatggacaatgattccacttatatcgaccctgtgcccgagataaccaaggcc
cacttcgaggaggcaatgaaatttgcgcggcgctctgtcagtgatgctgacatcaggaag
tatcaggcattctcacaaaccctgcagcagtcccgtggctttggcaatgacttccgcttt
ccagatggaaacaacagaagcaacggtggcggaggaggagatggtactgctgatcacttc
ggcgcaggcgactctcaactctttacttcaggagaagcacaagacgatgatgacctgtac
agttag

DBGET integrated database retrieval system