Micromonas commoda: MICPUN_77437
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Entry
MICPUN_77437 CDS
T02695
Symbol
CDC48
Name
(RefSeq) cell division cycle protein 48-like protein, expessed
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mis
Micromonas commoda
Pathway
mis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
MICPUN_77437 (CDC48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_77437 (CDC48)
03009 Ribosome biogenesis [BR:
mis03009
]
MICPUN_77437 (CDC48)
04131 Membrane trafficking [BR:
mis04131
]
MICPUN_77437 (CDC48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mis04147
]
MICPUN_77437 (CDC48)
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
MICPUN_77437 (CDC48)
Ribosome biogenesis [BR:
mis03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
MICPUN_77437 (CDC48)
Membrane trafficking [BR:
mis04131
]
SNARE
SNARE associated proteins
Others
MICPUN_77437 (CDC48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
MICPUN_77437 (CDC48)
Exosome [BR:
mis04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
MICPUN_77437 (CDC48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_17
AAA_28
Parvo_NS1
AAA_18
ATPase_2
IstB_IS21
Vps4_C
ABC_tran
Viral_helicase1
AAA_7
NACHT
DUF815
TsaE
NB-ARC
ResIII
AAA_24
Zeta_toxin
Sigma54_activ_2
KAP_NTPase
Zot
UFD1_N1
Motif
Other DBs
NCBI-GeneID:
8250478
NCBI-ProteinID:
XP_002507162
JGI:
MicpuN3_77437
UniProt:
C1FDN1
LinkDB
All DBs
Position
1:join(746772..746871,747012..747238,747297..749435)
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AA seq
821 aa
AA seq
DB search
MVDSPDDKSGIRVKKDTSTAILERKKSPNRLVVDEAVNDDNSVVALNLQKMDELQLFRGD
TVLIKGKKRKDTVCIVLADEFCEEGKIRMNKVVRKNLRVRLGDVVSIHQCTDVKYGQRIH
VLPFSDTIEGVSGNLFDVYLKPYFLEAYRPVRKGDTFLARGGMRGVEFKVVETDPAEYCI
VAPDTEIFCEGEPINREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPTLFKTIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN
APAIIFIDEIDSIAPKREKTQGEVERRIVSQLLTLMDGMKSRAHIIVMGATNRPNSVDPA
LRRFGRFDREIDIGVPDETGRLEVLRIHTKNMKLDEEVDLEKVSKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEVLDTMAVTNDHFVTALGTSNPSALRETVVEVPNVSW
EDIGGLETVKQELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIANQRGSSSGDAGGA
ADRVLNQLLTEMDGMGSKKTVFIIGATNRPDIIDSALMRPGRLDQLIYIPLPDEKSRLSI
FRANLRKSPLAPDVDVTTLARFTNGFSGADITEICQRACKFAIRESIQRDIEREQASSID
PDAMDNDSTYIDPVPEITKAHFEEAMKFARRSVSDADIRKYQAFSQTLQQSRGFGNDFRF
PDGNNRSNGGGGGDGTADHFGAGDSQLFTSGEAQDDDDLYS
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggtagattcccctgacgataagtctggaattcgcgtcaagaaggacacttcgaccgcc
atcctcgagcgcaagaagtccccaaatcgccttgttgtcgacgaagctgtgaacgatgac
aacagcgtcgtggcgctcaacctccagaagatggatgaactgcagctctttcgcggggat
acggtgctgatcaagggcaaaaagcgcaaagacaccgtttgcatagtactcgcagatgaa
ttttgcgaggagggcaaaattcgtatgaataaagttgttcgcaaaaatctacgtgttcgt
ctgggagatgtcgtgtctatccaccagtgcaccgacgtgaaatacggacaacggattcac
gttttgcctttcagtgatacaatcgaaggagtcagtgggaatttatttgacgtgtactta
aagccctattttcttgaggcctaccgcccggttcgaaaaggggatacgtttcttgctaga
ggaggcatgcggggcgtagagttcaaggttgtcgaaacagacccggctgagtattgcatc
gttgccccggatactgaaatattctgtgaaggtgagccaatcaacagagaagatgaggag
cgactcgacgaagttggttatgatgatgtcggcggtgtgcgaaagcagatggcacagatt
cgagagctcgtggagttacctttacgccaccctactctctttaaaacaattggtgtcaaa
ccgccaaaaggcatccttctttacggacctcctggatcaggaaaaactctcatcgcgcga
gcggtcgcaaatgaaactggtgcattcttctttctcatcaacgggccagagatcatgtct
aaacttgctggtgaatccgagtcaaaccttcgcaaagcttttgaggaagctgagaagaac
gcgccggcgatcattttcatagacgagatcgattccattgcaccgaagcgtgagaaaaca
cagggggaagttgaacgaagaatcgtttcgcaactgcttactttgatggatggcatgaag
tcacgagcccatatcatcgtcatgggcgcaactaaccggcccaattctgttgatccagca
ctgaggcgtttcggtcgcttcgaccgggaaattgatattggcgttcctgatgaaacaggc
cgtctcgaagtgctgcgcatccacacgaaaaacatgaagctcgatgaagaagttgacctt
gagaaagtttcgaaagagacgcatggttatgttggcgctgacctcgctgcactttgtaca
gaagctgcgcttcagtgtattcgagaaaagatggatgtcattgatcttgaggatgaaacg
attgatgccgaggtattagacacaatggcagtgacaaacgatcacttcgtgactgctctc
ggaacttcgaatccatccgcgttgcgagagaccgttgtcgaagtcccgaatgtttcctgg
gaagacatcggtggacttgaaaccgtcaagcaagaacttcaagaaaccgtgcagtaccct
gttgagcatcctgaaaagtttgaaaagttcggcatggcgccatctaagggcgtgttgttc
tatggaccgccaggatgcggcaaaacattgcttgcaaaagcgattgcaaatgagtgtcag
gcaaacttcatatctgtcaaaggccctgagctccttaccatgtggttcggtgaatcagaa
gcaaatgtgagggagattttcgacaaagctcgtcagtccgctccatgcgtgctttttttc
gatgaattggattcgattgccaatcagagaggatccagttctggcgacgctggaggcgca
gctgatcgcgtcttgaatcaacttctcaccgagatggatggtatgggttcaaagaaaacg
gtgtttatcatcggagccaccaatcgtccagacattattgactctgctttgatgcgtcct
ggccgccttgatcaacttatatacatccccctacccgacgaaaagtctcgactttctata
ttcagggcaaacttgcgcaagtcgcctctcgcacctgacgttgacgtgaccaccctcgcg
cgttttacgaatggtttttcaggagcagacatcacagaaatatgtcaacgtgcgtgcaaa
ttcgccattcgcgagagcattcagcgtgacatagagcgagaacaggcttcgtcgatcgat
cctgacgcgatggacaatgattccacttatatcgaccctgtgcccgagataaccaaggcc
cacttcgaggaggcaatgaaatttgcgcggcgctctgtcagtgatgctgacatcaggaag
tatcaggcattctcacaaaccctgcagcagtcccgtggctttggcaatgacttccgcttt
ccagatggaaacaacagaagcaacggtggcggaggaggagatggtactgctgatcacttc
ggcgcaggcgactctcaactctttacttcaggagaagcacaagacgatgatgacctgtac
agttag
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