Micromonas commoda: MICPUN_78816
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Entry
MICPUN_78816 CDS
T02695
Name
(RefSeq) predicted protein
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
mis
Micromonas commoda
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mis03041
]
MICPUN_78816
03016 Transfer RNA biogenesis [BR:
mis03016
]
MICPUN_78816
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MICPUN_78816
Spliceosome [BR:
mis03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
MICPUN_78816
Transfer RNA biogenesis [BR:
mis03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MICPUN_78816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
Motif
Other DBs
NCBI-GeneID:
8240996
NCBI-ProteinID:
XP_002499801
JGI:
MicpuN3_78816
UniProt:
C1DZ63
LinkDB
All DBs
Position
2:join(1748385..1749278,1749333..1749989,1750071..1750892)
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AA seq
790 aa
AA seq
DB search
MSAFEELGVCPELIRAADDAGWLLPTPVQAEAVPLILGGGDVLAAAETGSGKTGAFGIPV
LQIVHEALRDAAATRATGGPSAATTDETAHGAASVRVSVDDRSALFAVNNSPPDLPKGLA
LTQARSPAQWAGARATVGVAHGGRHHFEITVVDDGLVRCGWSTVAGSLDGLGTDSHSFGF
GGTGKKSHGGAFETFGKPFGAGDVVGCSVDLERGVVNFSINGQDCSGLGSGDKSGDAFTI
PASMRGHALFPAVCLKNAECVVNFGHAPWAYPPPPGHDGVARADRKFVTMNDGPPRGSTK
GGAGNGGERRRTGRTPKAIVLEPARDLAEQTFNFFKSFATNLRDPTISAGLFVGGTDVSG
DVKTLRDGCDVAVGTPGRIVDMVESGKLDVSNVRFFVLDEADRLLDSGNRGAILKLFDRM
PKSGDGFVRLQVLLFSATLHSGDIEDLAARLCERPAWVDLRGKDSVPETVHHACVVVNPT
ERSTFDRCTFEDASGATLPPVPTDNAHAHDDVNEGADLAASQSVKRLKPLVLKRLIDAHR
MDQALIFCRTNFDCDNVESFLNACGGGRAYRGKSEKGPENPYSCVVLGGARSMDERRRNL
AAFKEGDVRFLICTDVAARGLDIKGLPFVVNVTLPDRSEDYVHRIGRVGRADTMGLAISI
VSAVPERVWYCQKKGYKPWFNPSRADVKEHCVWYDEEKLLKDVEARIKAPVARIDPATLA
LPKELLRKLGREEGGAGAGDVGVYGKRVGGELNAEISAHLEAYAPSVKRLAELEVQAQAS
FWRLKRKFAG
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgttcgaggagttgggcgtgtgccccgagctgatccgtgccgccgacgacgca
ggctggctcctgcccaccccggtgcaggccgaggcggtgccgctgatcctcggcggtggg
gacgtgctcgcggcggcggagacgggcagcgggaagaccggcgcgttcggcatcccggtg
ctgcagatcgtccacgaggccctacgcgacgcggccgccacgagagcgacgggaggcccg
tcggcggcgacgaccgacgagaccgcgcacggagccgcgtcggtgcgcgtgagcgtggac
gaccgctccgcgctcttcgccgtgaacaactcgcccccggacctcccaaaagggctcgcg
ctgacgcaggcccggtcgccggcgcagtgggcgggcgcgcgcgccaccgtcggcgtagcg
cacggcggacgccatcacttcgagatcaccgtcgtggacgacggattggtccggtgcggg
tggagcaccgtcgcggggtcgctggacggcctcggcaccgattcgcactcgttcgggttc
ggaggcacggggaaaaagtcgcacggcggtgcgttcgagacgttcggcaagcccttcggc
gccggtgacgtcgtggggtgttccgtcgacctcgagcgcggcgtcgtcaacttctcaatc
aacggccaagactgttccggactcggttccggcgacaaatccggcgacgcgttcacgatt
ccggcgtccatgaggggccacgcgctgttcccggcggtgtgcctgaagaacgcggagtgc
gtcgtgaactttgggcacgcgccgtgggcgtatcccccgcctcccggccacgacggcgtc
gcccgcgccgacagaaagtttgtcacgatgaacgacggcccaccccgcgggtcgacgaaa
gggggcgccgggaacgggggggaacgaaggaggaccggccggacccccaaggcgatcgtg
ttggaacccgcgcgcgacctcgcggagcagacgtttaatttctttaaatccttcgctacg
aacttgagggacccgacgatttccgcgggcctcttcgtgggcgggacggacgtgagcggg
gatgttaaaacgttgcgcgacgggtgcgacgtcgcggtgggcacccccggccgtatcgtc
gacatggtggagtccggtaagctcgacgtctcgaacgtccgtttcttcgtgttggacgag
gcggaccgactgttggactcgggcaaccggggcgcgattttgaaactcttcgatcggatg
cccaagagcggggacgggtttgtacggcttcaggtgctgctgttcagcgcgacgctgcac
tccggggacatcgaggacctcgccgcgaggctgtgcgagcgcccggcgtgggtggacctg
cgagggaaggactcggtgccggagacggtgcaccacgcctgcgtcgtcgtcaaccccaca
gaacgttcgacgtttgatcgttgcacgttcgaagacgcgtccggtgcgacgttaccgccc
gtccccaccgacaacgcccacgcgcacgacgacgtgaacgagggcgcggacctcgcggcg
tcccagtcggtcaagcggctcaagccgctggtgctcaagcgattgatcgacgcgcatcga
atggaccaggcgctcatcttctgtcgcaccaacttcgactgcgacaacgtcgagtcgttt
ctgaacgcgtgcgggggcgggcgagcgtaccggggcaagtcggagaagggtccggaaaat
ccgtacagctgcgtcgtgttgggaggcgctcgatcgatggacgagcggcgccgaaacctc
gcggcgttcaaggagggcgacgttcggtttctcatctgcaccgacgtcgccgcgcggggt
ttggacatcaagggcctgcccttcgtcgtcaacgtcacgctgccggatcggagcgaggat
tacgtccaccgcatagggcgcgtgggccgggcagacacgatgggtctggccatctcgatc
gtgtccgcggtgccggagcgggtgtggtactgccagaagaaggggtataaaccctggttc
aacccgtcgagggcggacgtgaaggagcactgcgtgtggtacgacgaggaaaagttgctg
aaggacgtcgaggcgaggatcaaggcgcccgtcgcgaggatcgacccggccaccttggcg
ttaccgaaggagctgcttcgcaagctgggccgggaggaggggggggcgggcgccggcgac
gtcggcgtgtacggcaaacgcgtcggcggcgagctcaacgcggagatatcggcgcacctc
gaagcctacgcgccgtcggtgaagcgactcgccgagctcgaggtgcaagcgcaggcgagc
ttctggcggctcaagcgaaagttcgccgggtga
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