KEGG   Micromonas commoda: MICPUN_80773
Entry
MICPUN_80773      CDS       T02695                                 
Name
(RefSeq) predicted protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
mis  Micromonas commoda
Pathway
mis03018  RNA degradation
mis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MICPUN_80773
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MICPUN_80773
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mis03019]
    MICPUN_80773
   03041 Spliceosome [BR:mis03041]
    MICPUN_80773
Messenger RNA biogenesis [BR:mis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MICPUN_80773
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     MICPUN_80773
Spliceosome [BR:mis03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    MICPUN_80773
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 8242737
NCBI-ProteinID: XP_002501844
JGI: MicpuN3_80773
UniProt: C1E4E5
LinkDB
Position
4:complement(1093755..1094126)
AA seq 123 aa
MLPLSLLKTSQGHPMLVELKNGETYNGHLVSCDTWMNVHLREVICTSKDGDRFWRMANCY
VRGNTIKYICVPDEVIGLVQEENLKKSQMKPQVGGRGRGGRDGGRGRGDGGRGGRGGRGG
RGV
NT seq 372 nt   +upstreamnt  +downstreamnt
atgcttcccctctcgctgctgaagacctcgcagggccaccccatgctggtggagctcaag
aacggcgagacgtacaacggccacctggtgagctgcgacacgtggatgaacgtgcacctc
cgggaggtgatctgcacgtcgaaggacggcgacaggttctggcggatggccaactgctac
gtgcggggcaacacgatcaagtacatctgcgtgcccgacgaggtcatcgggctggtgcag
gaggagaacctcaagaagtcccagatgaagccccaggtcgggggacgggggcgcggaggc
agggacggcggcaggggccggggcgacggcggcaggggaggccggggcggcaggggcggc
cgcggcgtgtga

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