Micromonas commoda: MICPUN_82978
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Entry
MICPUN_82978 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mis
Micromonas commoda
Pathway
mis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MICPUN_82978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mis03041
]
MICPUN_82978
03009 Ribosome biogenesis [BR:
mis03009
]
MICPUN_82978
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MICPUN_82978
Spliceosome [BR:
mis03041
]
Complex A
U1 snRNP components
U1 related factors
MICPUN_82978
Complex B
MICPUN_82978
Ribosome biogenesis [BR:
mis03009
]
Eukaryotic type
Pre-60S particles
Helicases
MICPUN_82978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
8244596
NCBI-ProteinID:
XP_002502954
JGI:
MicpuN3_82978
UniProt:
C1E8T7
LinkDB
All DBs
Position
6:<976196..977503
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AA seq
435 aa
AA seq
DB search
DWSDAPLFEKNFYLEHPAVASRSEKDVDAFRAARGMRVTGRDPPKPASTFEESSLPAYCV
DELAKCGFPSPTPVQSQTWPAALSGRDVISIAETGSGKTLAFLLPAVVHINAQPYLERGD
GPIVLILAPTRELAVQIQEQAATFGKSSKIKSACIYGGAPRNAQIAALREGVELCVATPG
RLLDLLNAKATNLRRVTYFVLDEADRMLDLGFEPQIRRVERLTRPDRQTLLFTATWPAEV
AAAAGDFTNDVVTVRIGGEALRASDNVSQIVEVVDEDDKHAKLVGWLERALGEADAGGWT
PRVIVFLSSKARVDSATRRLRHEGFPALSIHGDKTQEEREWVLGEFRAGKSPVMLATDVA
ARGLDVKDVSLVINYDFPAKMEDYVHRIGRTGRAGAKGAARSMFAAGDARHARSLCGLLQ
TAGQPVPRELVQFLT
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
gactggagcgacgcgccgctcttcgagaagaacttctacctcgagcatcccgccgtcgcg
tcgcgttcggagaaagacgtcgacgccttccgcgcggcgcgcggcatgcgggtcaccggt
cgcgatcccccaaaacccgccagcaccttcgaggaatcgtccctgcccgcgtactgcgtc
gacgagctcgcgaagtgcgggttcccctcgccgacgcccgtgcagtcccagacgtggccc
gcggcgctgtccggccgcgacgtcatatccatcgcggagacgggcagcggcaagaccctc
gcgttcttgctgcccgcggtggttcacatcaacgcgcagccttacctggagcgaggggac
ggccccatcgtgctcatcctcgcgcccaccagggagctcgcggtgcagatccaggagcag
gcggcgacgtttggcaagtcgtccaagatcaagagcgcgtgcatctacggcggcgcgccg
cgtaacgcgcagatcgccgcgctgagagagggcgtcgagttgtgcgtcgccacacccggt
cggctcctcgaccttctcaacgccaaggcgaccaacctgcgtcgcgtgacctacttcgtg
ctggacgaggcggaccgcatgctagacctggggttcgagccgcagatccgaagggtggag
cggctcacgaggccggaccgacagacgctactcttcaccgcgacgtggcccgcggaggtc
gccgccgccgcgggcgactttaccaacgacgtcgtgacggttcgcatcggcggcgaggcg
ttacgggcgtcggataacgtctcacagatcgtcgaggtggtggacgaggacgacaagcac
gcgaaactggtggggtggctggagcgggcgctcggcgaagccgacgcggggggttggacg
ccgagggtcatcgtcttcctgtcgagcaaagctcgggtggactccgcgaccagacggctg
cggcacgagggcttccccgcgctgtccatacacggcgataagacgcaggaggaacgagag
tgggtgttgggggagttcagggctggtaaatcgcccgtgatgctcgccacggacgtcgcc
gcgcgaggcctcgacgtgaaggacgtgagtttggtgatcaactacgacttcccggcgaag
atggaggattacgtgcaccggatcgggcggacggggcgcgcgggggcgaagggggcggcg
aggagcatgttcgcggccggggacgcgagacacgcgaggagcctgtgcggtttgctgcag
accgcggggcaaccggttcccagggagttggtgcagttcctcacctga
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