Micromonas commoda: MICPUN_84121
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Entry
MICPUN_84121 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
mis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MICPUN_84121
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_84121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_84121
03041 Spliceosome [BR:
mis03041
]
MICPUN_84121
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MICPUN_84121
mRNA degradation factors
5'-3' decay
Lsm complex
MICPUN_84121
Spliceosome [BR:
mis03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
MICPUN_84121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
BPL_C
Motif
Other DBs
NCBI-GeneID:
8245988
NCBI-ProteinID:
XP_002508357
JGI:
MicpuN3_84121
UniProt:
C1FGW4
LinkDB
All DBs
Position
8:complement(join(1270581..1270810,1270945..1271029))
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AA seq
104 aa
AA seq
DB search
MSGKKETVLDLGKFIDKGVRVKLAGGREVTGTLKGFDQLLNLVLDECEEYLRDPEDPLKV
TDQTRSLGLIVARGTSVMVVSGLDGMEEIANPFLQPEGEMAPLE
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcaagaaagagaccgtgctggacctggggaagttcatagacaagggggtgcgc
gtgaagcttgccggcggacgcgaggtgaccggcacactcaagggtttcgatcagctcctg
aacctggtgctggatgagtgcgaggagtacctgagagacccggaggatccgctgaaggtt
actgatcagaccaggagtcttggactgatcgtggcccgcggcacctcggtcatggtggtg
tcgggcctggacgggatggaggagatcgccaacccgttcctgcagcctgagggtgagatg
gcgccgctggagtga
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