Micromonas commoda: MICPUN_87736
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Entry
MICPUN_87736 CDS
T02695
Name
(RefSeq) predicted protein
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
mis
Micromonas commoda
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mis03041
]
MICPUN_87736
03009 Ribosome biogenesis [BR:
mis03009
]
MICPUN_87736
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MICPUN_87736
Spliceosome [BR:
mis03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
MICPUN_87736
Ribosome biogenesis [BR:
mis03009
]
Eukaryotic type
90S particles
Helicases
MICPUN_87736
Pre-60S particles
MICPUN_87736
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SMCR8_C
Myc_N
Motif
Other DBs
NCBI-GeneID:
8248796
NCBI-ProteinID:
XP_002505626
JGI:
MicpuN3_87736
UniProt:
C1EFP0
LinkDB
All DBs
Position
13:join(997863..998174,1001094..1002644)
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AA seq
620 aa
AA seq
DB search
MAKHRDQDAAAAAAAVAPGTAEFAALTEAEVEPSDVFFHRYYANKSESKKAKKKKRDDDG
SDDEGSDDESEEDDDAAAERKKKAKAKAGIEGVDEDDDEEDDDDGERIQVQVDGILSDKT
FDSLTLSKQTMAGISELGYTRMTEVQARTIPPLLAGRDVLGAARTGSGKTLAFLIPSVEL
LYHAKFMPRNGTGVMVLSPTRELALQIYNVAQQLMKKHSQTHGLIIGGANRRAEAEKLVK
GVNLLVATPGRLLDHMQNTKGFAFGSLKVFCMDEADRMLDIGFEEEMRTIVRMIPKDRQT
MLFSATQTTKVEDLARLSLKSPTYIGVDDARAVSTATGVEQGYCVVPSEKRFLLLFTFLK
KNLKKKVMVFFSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKADRGILLC
TDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGTEGKGRALLFLIPEELGFLKYL
KAAKVPLNEYEFPQKKIANVQSQLEKLVEKNYYLHQSARDAYRSYILAYNSHTLKDVYNV
HELNLMSVALSFGFHRPPKVQLNLDSKAANGRKRIGDGKGMERAKGGSDYRRQKGTGHGF
SADNPYGKRDSSDRRQFVRG
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcatcgtgaccaggacgcggcagccgctgctgcggcggtcgctccggggact
gctgagtttgccgcgctcacggaggctgaggttgagcccagcgacgtcttctttcaccgc
tactacgccaacaagtctgaatccaaaaaggcaaagaagaagaagcgcgacgacgacggg
tcagatgacgagggatctgacgacgaatccgaggaggatgacgacgccgccgcggagcgc
aagaaaaaggcaaaggcaaaggctggtatcgagggtgtcgatgaggacgacgacgaggag
gatgacgacgatggcgaacgcatccaggtgcaagtggacggaatcctgagcgacaagacc
ttcgactccctcaccctttccaagcagaccatggctggcatctccgagctcgggtacact
cggatgaccgaggtgcaggcgaggaccatcccgcccctcctcgctggccgcgacgtactc
ggcgccgcgcgcacgggctccggtaagaccctcgcgttcctcattccctcggtcgagctc
ctgtaccacgccaagttcatgccccgcaacggcaccggcgtgatggtgctctccccgacg
agagagctcgcactccaaatctacaacgtcgcacagcagctcatgaagaagcactctcag
acgcacggcctcatcatcggaggcgccaacaggcgcgccgaggcggagaagctggtcaag
ggcgtcaacctcctggtcgcaaccccgggtaggctcctggaccacatgcagaacaccaag
ggattcgcgtttggcagcctgaaggttttctgcatggatgaggcggaccgcatgctcgac
atcgggttcgaggaggagatgcgcaccatcgttcgcatgattcccaaggacaggcagacc
atgctctttagcgccacacagaccacgaaggttgaggacctcgcgcgtctctccctcaag
tcgcccacctacatcggcgtcgacgacgcgagggcagtgagcaccgcgactggcgtcgag
caggggtactgcgtggtgccgagcgagaagaggttcctgctgttgttcacgttcctgaag
aagaacctgaagaagaaggtgatggtgttcttcagcagctgcaacagcgtcaaataccac
gccgagctgctcaactacatcgacattcccgtcagcgacatccacgggaagcaaaagcag
cagaggcggacgacgacgttctttgagttttgcaaagccgaccgcggcatccttctgtgc
acggacgtcgccgcgcgtggactcgatatccccgccgttgactggatcattcagtttgat
cccccggacgatcctaaggagtacattcacagggttggacgcaccgcgcgtggcaccgaa
ggcaaagggcgcgctctcctcttcctcatccccgaggagctcggcttccttaagtatcta
aaggcggcaaaggttccgctcaacgagtacgagtttccccagaagaagatcgcgaacgtg
cagtcgcagctggagaagctcgtggagaagaactactaccttcaccagtccgccagggac
gcgtacaggagctacatcctcgcgtacaactcgcacacgctcaaggatgtctacaacgtg
cacgagctcaacctgatgtcggtggctctctcgtttggtttccatcgcccgccgaaggtg
cagctcaaccttgacagcaaggcggcgaacgggaggaaaagaatcggcgacgggaagggg
atggagagagcaaagggagggagcgactaccgcaggcagaagggcacgggccacggcttt
tctgctgacaacccctacggaaagagggactcgtccgacaggcggcagttcgtccgagga
tga
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