Micromonas commoda: MICPUN_88392
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Entry
MICPUN_88392 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_88392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_88392
03041 Spliceosome [BR:
mis03041
]
MICPUN_88392
03009 Ribosome biogenesis [BR:
mis03009
]
MICPUN_88392
03016 Transfer RNA biogenesis [BR:
mis03016
]
MICPUN_88392
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MICPUN_88392
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
MICPUN_88392
Spliceosome [BR:
mis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MICPUN_88392
Complex C
U4/U6.U5 tri-SnRNP related factors
MICPUN_88392
Ribosome biogenesis [BR:
mis03009
]
Eukaryotic type
Pre-60S particles
Helicases
MICPUN_88392
Transfer RNA biogenesis [BR:
mis03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
MICPUN_88392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
8248929
NCBI-ProteinID:
XP_002506209
JGI:
MicpuN3_88392
UniProt:
C1EH94
LinkDB
All DBs
Position
14:complement(join(536534..537676,537743..539743))
Genome browser
AA seq
1047 aa
AA seq
DB search
MPTAQNAPSEAAAAARAILAARKPPPPADDGDSDEEGAAAPQAPQRSSCRHSVAVPPDWQ
GDRAALDAPSYDGERAKTYPFVLDAFQETSVSVLERNESVLVAAHTSAGKTVVAEYAIAM
AFRDNQRVVYTSPLKALSNQKFRELTEEFGDVGLMTGDVCINPNASCIVMTTEVLRGMLY
RGSDVVREVKWIIFDEVHYMRDRERGVVWEESIIFAPAGCKFVFLSATLPNAHEFAEWIT
HLHNHPCHVVYTDYRPTPLQHYGFPKGGNGMVMIVNERKEFLEANYAELEAKIDALTQSA
KKRKRDERVKADGGRGRGGGGRGGGGRGGRWGRGGGRGGDSGEDASEVDIKKIMKTIRAR
DLYPVIVFSFSRRACETHANDLMTGKTQLDFTTQEQKELIRQIYDNALLCMAEEDRELAC
VQKIFPMLERGIGIHHGGLLPIIKELVEILFGESLVKCLFATETFAMGLNMPARTCVFTE
VEKFDGKEMRVLQPGEYTQMAGRAGRRGKDDRGTCILMLDKKLDKEELVHMTCGTGSALM
SEFKLTYYSILNLLRRASGEEDAEYVIQRSFHQFQHTREVPRKKLELQEITAEADGIQLD
MSDAKAELVRLQNAARDARTALMHHAVDPEKLTRDVLKPGRLVRVRDGDDEWGWGAVVGV
RDLPAEAMRVRRRAIDVLIHCGPGVDSGVLRPAKRILGRPGKLAEKGCTCEIIPVALRLV
DAVGAMVLTLPRDLTDATSRAQVGLAINELHHRFQGKAVPELDLENDLRLDGDEFHESMG
RWLRSESELRAHPLYAASTKEGGLNEKQIELYRKKASLMERAQDLKKEIKTTQLSKFREE
LRDRSRVLTRFGMLDEEGTVTHKGRAACEIDTADEVLVTELMFNGCFVAMDHHALVALCS
MFMPVEKTNEVYPLAGAAKEALEGPVKQLREAAKAIAEAEIDFGVRTQAAEGEDGRHEAV
TEYVDSFKDALVGMVYDWSKGTNFDTIMRGTDMFEGTFVRAARRLDELMMELHRAARAVG
SAELADSFEKGAESLRHGVVSAASLYL
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgcgcagaacgcccccagtgaagccgccgccgccgcgagggcgatcctcgcc
gctcgcaaaccaccgccgcccgccgacgacggcgattccgacgaggagggcgccgccgcc
cctcaggcgccgcagcgttcctcctgccgccactccgtggctgtgccccccgattggcag
ggcgacagagccgcgctcgacgcgccctcttacgacggagagcgcgccaagacgtatccg
ttcgtcctcgacgccttccaggagacgtccgtgtcggtgctggagcgcaacgaatcggtg
ctcgtcgcggcgcacacctccgcgggaaagaccgtcgtcgcggagtacgccatcgccatg
gcgttcagggacaatcagagggtggtgtacacctcgccgctcaaggcgctgagcaaccag
aagttcagggagctcaccgaggagtttggggacgtcgggttgatgacgggcgacgtgtgc
attaatccaaacgcctcgtgcatcgtgatgaccaccgaggtgctgaggggcatgctctac
cgcggcagcgacgtcgtgcgggaggtgaagtggatcatcttcgacgaggtgcactacatg
agggacagggagcgcggggtggtgtgggaggagagcataatcttcgcccccgccgggtgc
aagttcgtcttcctctccgcgacgctaccaaacgcgcacgagttcgccgagtggatcacc
cacctgcacaaccacccgtgccacgtcgtctacaccgactaccgccccacgccgctgcag
cactacgggttccccaaggggggcaacggcatggtcatgatcgtcaacgagcggaaagag
tttctggaggcgaattacgccgagctcgaggcgaagatcgacgcgctgacgcaatcggcg
aagaagaggaagagggacgaacgggtcaaggcggacggcggacgcgggcgaggcggcggc
ggacggggcggcggcgggagaggcggaaggtggggacggggcggcggaaggggcggggac
agcggcgaggacgcgagcgaggtggacataaagaagatcatgaagaccatccgagccagg
gacctgtacccggtcatcgtgttctccttctccaggcgggcgtgcgagacccacgccaac
gacctgatgacgggcaaaacccagctggacttcaccacgcaggagcagaaggagctcatc
aggcagatatacgacaacgcgctgctgtgcatggcggaggaggaccgcgagttggcgtgc
gtccagaagattttcccgatgctcgagcgcgggatcggcatccatcacggcgggctactc
cccatcatcaaggagctcgtcgagattctcttcggggaatccttagtgaagtgcctgttc
gccacggagacgttcgcgatgggtctgaacatgcccgcgcgaacgtgcgtgttcacggag
gttgaaaagtttgacgggaaggagatgcgcgtgcttcagcccggcgagtacacccagatg
gcgggtcgagcggggcgcaggggaaaagacgaccggggcacgtgcatcctgatgctcgac
aagaagttggacaaggaagagctcgtgcacatgacgtgcgggaccggatcggcgctcatg
tcggagttcaagctcacgtattacagcatactcaacctgctgcgaagggccagcggcgag
gaggatgccgaatacgtcatccagcgttcgtttcaccagtttcagcacacgcgagaggtt
ccgcggaagaagctggagctgcaggagatcaccgcggaggcggatgggattcaactggac
atgtccgacgccaaggctgagctcgtgcgcctgcagaacgccgcgagggacgcgagaacc
gcgctcatgcatcacgccgtcgatccagaaaaattgacccgagacgtcttgaagcccggg
cgactggtgcgcgtgcgcgacggcgacgacgagtggggatggggcgcggtcgtgggcgtg
cgcgatcttcccgcggaggcgatgcgcgtccgtcgacgggccatcgacgtcttgatccac
tgcggccccggtgttgactcgggggtgttgaggcccgctaagcgcatactcggtaggccg
gggaagctcgccgagaaggggtgcacgtgtgagatcatacccgtggcgcttcggctcgtg
gacgcggtgggcgcgatggtgttgaccctcccgagggacttgacggatgcgacatcgcgc
gcgcaggttggcttggcgattaacgagctgcatcacaggttccagggcaaggctgtcccg
gagctggatttggaaaacgaccttcgcctcgacggcgacgagtttcacgagtccatgggg
cgttggttgcggtccgagtctgagctgagggcgcatccgttgtacgccgcctcgacgaag
gagggcggattaaacgagaaacagatcgagctctaccgcaagaaggcttcgctgatggaa
cgcgcgcaagatctgaagaaggagatcaagaccacgcagctctcaaagttcagggaggag
ctgagggacaggtcccgcgtgctgacgcgcttcggtatgctcgacgaggaagggacggtg
actcacaagggccgcgcggcttgcgagattgacaccgccgacgaggtcctcgtcaccgag
ctcatgttcaacgggtgcttcgtcgccatggaccaccacgcgctggtggcgctttgttcg
atgttcatgcccgtggagaagaccaacgaggtctatcccctcgcgggagccgcgaaggag
gcgttggaaggaccggtcaagcagctgagggaggcggccaaggccatcgcggaggcggag
atagacttcggcgtgaggacgcaagccgcggagggcgaggacgggcggcacgaggcggtg
accgagtacgtcgactccttcaaggatgccctggtgggcatggtgtacgactggagcaag
ggcacgaacttcgacacgatcatgcgaggcaccgacatgttcgaggggacgtttgttcgc
gccgcgcggcgtctcgacgagctcatgatggagctgcacagggcggcgagggcggtggga
agcgcggagctcgcggactcgttcgagaagggcgcggagagtttgaggcacggcgtggta
tcggccgcgagcctctacctgtga
DBGET
integrated database retrieval system
