Micromonas commoda: MICPUN_93101
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Entry
MICPUN_93101 CDS
T02695
Name
(RefSeq) predicted protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mis
Micromonas commoda
Pathway
mis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MICPUN_93101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_93101
03041 Spliceosome [BR:
mis03041
]
MICPUN_93101
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
MICPUN_93101
Spliceosome [BR:
mis03041
]
Complex B
Other components
Prp19-related factors
MICPUN_93101
Complex C
MICPUN_93101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
RPN7
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
8250559
NCBI-ProteinID:
XP_002507640
JGI:
MicpuN3_93101
UniProt:
C1FE46
LinkDB
All DBs
Position
1:complement(join(1249152..1251188,1251286..1251537,1251608..1251769))
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AA seq
816 aa
AA seq
DB search
MPSGEDLLFEEELLRTPDSVQLWARYLEARKEPDCPRRRLIFERAVRTLPGSYKLWHAYL
KERCEATRDLCITSRVFDSLNNTFERALVTLYKMPKVWELYLGILVKQRSITKVRHTFDR
ALAALPVTQHERIWKMYLVFVKRDFIPIETARQIYRRYLKFEPGHAEEYIEFLKARHLWS
EAASWTAEILNDDTFQSLSGKSRHDFWVDLCEIVTRYPNDMEVINVDATLRGGIEKMDFE
TGRLWASLADYYIRRGLFDKACDVFEEGITSVNTVHDFSLIFDAYAHFEESTLNAKLVIA
REDGDRADAKSNEDHGADFLKGDTGDDVDLRLARLEKLVGRRPELISSVMLRQNPHDISE
WKKRVSIFEGDPERQILTFTEAIRSVDSLKAVGKYNMLWVEFGKFYERHDDIVNARVVFE
KAVRATYRKVDDLATVWCEWAEFELRQNNFSHALTVLRRATEEPPKHAGDVVCVSRAKSL
HVQQYAFKSLKLWTFRCDLEESVGSFLSARDCYDRMINLQVATPQTILNFAAFLQEKGLN
EDSFQVYERGVNLFNFPHSRDIWRAYLHEIVKYFGGDRIEHTRDLFEQCCVNAPANHAKF
FYLEYARLEENFGVARRAMDIYKRACQSVPDGEKLEVYRIYITRAMHFFGIDMVRSIYQK
AIEEVISRDLAVDLSVQYAHLETKLGELDRARVLYVHASQFGNLAERTGFWDEWNRFEIH
YGNEDTFREMLRIKRSVSANVRQMHFNVAVTDISSGGTTESGGKGEGQIPAEIMPVVRDV
DGQRAADPLVESSSRIQASLVSGHNPDEIDVDITGE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgccctccggggaggatctactcttcgaggaagagttgcttcgaactccagatagtgtc
caactgtgggcacggtatctagaagccagaaaagaacccgattgccctcgccgacgactc
attttcgagagggccgtgcgaaccctccctggtagctataagttgtggcatgcctatcta
aaagaacgttgtgaagctacgcgcgatctctgtataaccagtcgggtgttcgactccttg
aacaacacgtttgagagggccctcgtaacattgtacaagatgccgaaggtctgggaactc
tacctgggtatcttggtaaaacaacggagcatcaccaaagtgagacatacgtttgataga
gctcttgcggcccttccggtgactcaacacgagcgtatatggaagatgtatctggtcttt
gtaaagagggactttatacctatcgaaacagctcgccaaatttataggcgctatctaaag
tttgagccaggacacgcggaagaatacatcgagtttctgaaggccaggcatttgtggagc
gaagctgcaagctggactgcggagattctaaatgacgacacttttcaatcactttcaggt
aaatcaaggcacgacttctgggtagacttatgtgaaattgtgaccaggtatcctaatgat
atggaagtaataaatgttgatgctacgctccgaggagggatagagaaaatggatttcgag
acaggaaggctctgggcatccctggcagactactatatcaggcgcgggctgtttgataaa
gcgtgtgatgtgtttgaggaaggaatcacttccgtaaacacagtgcacgatttctcccta
atttttgatgcatatgcacacttcgaagagagcacactgaatgcaaagctcgtgatcgct
cgtgaagatggtgatcgcgctgatgccaaaagtaatgaagatcacggggctgacttctta
aaaggcgatacgggtgacgatgtggacttacgcctcgcccgtctcgagaaacttgtggga
aggaggcctgaacttatttcatcggtgatgctccggcagaatccgcatgatattagtgaa
tggaaaaaacgagtttcgatttttgaaggggatcccgagcgtcaaattcttactttcacc
gaggcaatacggtcagttgactcactaaaagcagtgggcaaatacaacatgctatgggtt
gaattcgggaaattttatgagaggcacgatgacattgtgaatgctagagttgtgtttgaa
aaggctgtgcgtgctacgtaccgcaaggtcgacgaccttgctactgtctggtgtgagtgg
gctgaatttgagctgcgccagaacaatttctcacatgcactgaccgtgcttcgtcgggcc
acggaggagcctccgaaacacgctggtgacgtggtgtgtgtatcgagagcaaaatcactg
catgtgcaacaatatgctttcaaatcattgaagctttggacattccgctgcgaccttgaa
gaatccgtgggctcctttctatctgctcgcgattgctatgacaggatgatcaaccttcaa
gttgcgactccacaaacgattctaaattttgcggcgttccttcaagaaaaaggactcaat
gaagatagcttccaagtttatgagcggggcgtcaatcttttcaattttcctcactctcga
gacatttggcgtgcatatctccacgaaattgtgaaatattttggtggagatagaattgaa
cacacgcgtgatctgtttgagcagtgctgtgtaaacgcaccagctaatcatgctaagttt
ttttatttagagtatgcacgtctggaagaaaactttggcgttgcaaggcgtgctatggac
atatacaaacgcgcatgccaatccgtacctgacggagagaagttggaagtgtacaggatt
tacattacacgcgccatgcatttttttgggattgatatggttaggtcaatttaccagaaa
gcaattgaagaagtcatttcccgagatcttgcagtagatttaagtgtgcagtacgcacac
ttggagacgaaactaggggagttggatcgcgcacgcgtgctgtatgtacacgcaagccaa
tttgggaacctggcagagcggactggattctgggacgaatggaatcggttcgaaattcat
tacgggaacgaagatacctttcgcgagatgttgcgcatcaaacgttcagtgagtgctaat
gttaggcagatgcacttcaatgtggcagtcactgacatttcttcaggtggcacgactgaa
tcaggaggaaagggagaaggtcagatccctgctgagataatgcccgttgtccgagatgtt
gatggacaacgcgcggccgatccactagttgaaagttcttctagaattcaagcatccctg
gtgtcgggtcacaatccggatgaaattgacgttgatatcactggagaatag
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