Micromonas commoda: MICPUN_97077
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Entry
MICPUN_97077 CDS
T02695
Name
(RefSeq) predicted protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
mis
Micromonas commoda
Pathway
mis03013
Nucleocytoplasmic transport
mis03015
mRNA surveillance pathway
mis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MICPUN_97077
09122 Translation
03013 Nucleocytoplasmic transport
MICPUN_97077
03015 mRNA surveillance pathway
MICPUN_97077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_97077
03041 Spliceosome [BR:
mis03041
]
MICPUN_97077
03009 Ribosome biogenesis [BR:
mis03009
]
MICPUN_97077
03012 Translation factors [BR:
mis03012
]
MICPUN_97077
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MICPUN_97077
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
MICPUN_97077
mRNA cycle factors
Stress granule specific factors
MICPUN_97077
Spliceosome [BR:
mis03041
]
Complex C
Other components
EJC/TREX
MICPUN_97077
Ribosome biogenesis [BR:
mis03009
]
Eukaryotic type
90S particles
Helicases
MICPUN_97077
Translation factors [BR:
mis03012
]
Eukaryotic type
Initiation factors
eIF-4
MICPUN_97077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
CbiA
Helicase_RecD
DUF3638
AAA
Motif
Other DBs
NCBI-GeneID:
8241085
NCBI-ProteinID:
XP_002499891
JGI:
MicpuN3_97077
UniProt:
C1DZN1
LinkDB
All DBs
Position
2:complement(178106..179290)
Genome browser
AA seq
394 aa
AA seq
DB search
MDFDKDENITFDTSKGVKVVSTFDGMGIREDLLRGLYSYGFEKPSAIQQRAIVPITSGRD
VIAQAQSGTGKTSMISLALCQMLDTNTREVQALVLSPTRELATQTEKTALALGNFMSVQV
HACIGGRSIGEDIRKLDHGVHIVSGTPGRVFDMIKRRNLRTRNIKALILDEADEMLNKGF
KEQIYDVYRYLPPETQVVLVSATLPQEVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVA
VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTDKMRQNNFTVSSMHGDMPQKERD
AIMGEFRGGTTRVLITTDVWARGIDVQQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVA
INFVKADDVRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggacttcgacaaggatgagaacatcaccttcgacacgtccaagggcgtcaaggtggtc
agcaccttcgacggcatgggcatccgcgaggacctgcttcgcggcctctactcgtacggt
ttcgagaagccctcggcgattcagcagcgcgcgatcgtgcccatcaccagcggccgcgac
gtcatcgcgcaggcgcagtcgggcaccggcaagacgtccatgatctccctcgcgctctgc
cagatgctcgacaccaacacccgcgaggttcaggcgctggtgctgtcccccacgcgagag
ctcgcgacgcagacggagaagacggctctggcgctgggcaacttcatgagcgtgcaggtg
cacgcgtgcatcggcggacggtccatcggcgaggacatccgcaagctggaccacggcgtg
cacatcgtcagcgggaccccgggcagggtgttcgacatgatcaagcgacgaaacctccgc
accaggaacatcaaggcgctcatcttggacgaggcggatgagatgctgaacaagggattc
aaggagcagatctacgacgtgtacaggtacctacccccggagacgcaggtggtgctggtg
agcgcgacgctgccgcaggaggtgctggagatgaccaccaagttcatgacggacccggtc
cgcatcctcgtcaagcgcgacgagctgacgctggagggcatcaagcaattcttcgtcgcg
gtggagaaggaggaatggaaattcgacaccctgtgcgatctctacgacaccctcaccatc
acccaggccgtcatcttctgcaacaccaagcgcaaggtggactggctcacggacaagatg
cggcagaacaacttcacggtgagcagcatgcacggagacatgccccagaaggaacgggac
gccatcatgggggaatttcgcggcggcacaacccgcgttctcatcaccaccgacgtgtgg
gctcgcgggatcgacgtgcagcaggtgtcgctcgtcatcaactacgacctgcccaacaac
agggagaactacatccaccgcatcggtcgttccggtcggtacgggcgcaagggcgtggcg
attaactttgtcaaagccgacgacgtccgcatcctgcgcgacatcgagcagtactactcg
acgcagatcgacgagatgcccatgaacgtcgcggacctgatctga
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