Micromonas commoda: MICPUN_97378
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Entry
MICPUN_97378 CDS
T02695
Name
(RefSeq) predicted protein
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
mis
Micromonas commoda
Pathway
mis03030
DNA replication
mis03410
Base excision repair
mis03420
Nucleotide excision repair
mis03430
Mismatch repair
mis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MICPUN_97378
03410 Base excision repair
MICPUN_97378
03420 Nucleotide excision repair
MICPUN_97378
03430 Mismatch repair
MICPUN_97378
03440 Homologous recombination
MICPUN_97378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mis03032
]
MICPUN_97378
03400 DNA repair and recombination proteins [BR:
mis03400
]
MICPUN_97378
Enzymes [BR:
mis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MICPUN_97378
DNA replication proteins [BR:
mis03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
MICPUN_97378
DNA repair and recombination proteins [BR:
mis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
MICPUN_97378
MMR (mismatch excision repair)
DNA polymerase delta complex
MICPUN_97378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
RNase_H_2
Cohesin_load
Motif
Other DBs
NCBI-GeneID:
8243756
NCBI-ProteinID:
XP_002502470
JGI:
MicpuN3_97378
UniProt:
C1E609
LinkDB
All DBs
Position
5:complement(join(488040..491260,491279..491501))
Genome browser
AA seq
1147 aa
AA seq
DB search
MSGVKRPGEGEGPDGKRAYAGPSADFMDAEPELPEEYEDPDDDDVFLNDVMDQKVSARIE
RSSVPSFFSNRGVAATQHPSPDRIPDGVFPARAPPRRSQVNVANDAEREHWKRKPAPTLD
ASKDNLCFQQLDIDYVIGEPHAMLGPDRKAQGDSARLRIFGVTAGGNSVCVHVHGFEPYF
YAKVPDAFKDEMCEPFRVSLNGAMAANQRGGNQRGNGTFIGSVEIVRDKQSLMYFQEGKT
STFVKVTTTLPNMVATARGIIEKQGVTVPGLHHTSLTFQTFESNVLYTLRFMVDRGVVGG
NWVELPAGGYTIRESQKQSMCQYECDVKFDKVVSHPPEGQYSKLAPFRILSVDIECAGRK
GHFPDADHDPVIQIATMVTCQGDDRPIIKAIWTLDTCAPIVGADVLSFKDERELLRSWGK
FLRSTDPDLLIGYNIVNFDFPYLINRAERLNVEDFAYWGRMIGSKLRMKDTTFSSKAYGT
RDSKEITIEGRVQFDLLQAVQRDHKLSSYSLNAVSAHFLGEQKEDVHHSAISELQAGTAE
TRRRLAVYCLKDAYLPQRLLDKLMYMYNYIEMARVTGVPLSFLLARGQSIKVLSQILRKA
KQRGLLVPHIAKKGGGEQADGGVAYEGATVLDAKAGYYEMPVATLDFASLYPSIMMAHNL
CYSTLVPRDRVQFMASEDVTRTPCGDTFVKSHKEKGILPEILTELLSARKRAKADLKKAQ
DPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLEISSSTTAFGREMIDHTKAMVEKR
YTTANGYKANADVIYGDTDSVMIKFNVPELEDAMKLGEEAAEYVSATFIKPIKLEFEKVY
FPYLLISKKRYAGLLWTKTEKYDYMDTKGIETVRRDNCLMVRQVIETCLEKILIHRNPKG
AISYVKNTISDLLMNKLDMSLLVITKSLSQAPENYAVNAPHVELAKKMAVRDPVTAPVVG
DRVAYVMIKGPKNAKSYEKSEDPIYAMDNNIPIDSHHYLEHFLAKPLLRIFEPIMGAEKA
ESELLKGDHTRTIAVPTPTAKAGGIMAFAKVRLSCVGCRSSITDEKQSTALCTHCLGKEP
EHLQKALNSVNALERDFNRLWTQCQRCQGSLHQDVLCTSRDCPIFYRRKKVQKDLMDAEN
TLKRFDW
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgtgaagagaccgggcgagggcgaaggtcccgacggcaagcgcgcgtacgcc
ggcccctccgcggacttcatggacgctgaacctgagcttcccgaggagtacgaggatcca
gacgacgatgacgtcttcctcaacgacgtcatggaccagaaggtgagcgcccgcatcgaa
cgatcgtcggtgccctcttttttttcaaaccgcggggttgcggcgacccaacacccttca
cccgaccgtatccctgacggcgtcttccccgcgcgtgcccccccgcggcgttcacaggtc
aacgtcgcgaacgacgcggagagggagcactggaagcgcaagcccgcgccgaccctcgac
gcctccaaggacaacctctgcttccagcagctcgacatcgactacgtcatcggcgagccg
cacgccatgctgggccccgaccgcaaggcgcagggcgacagcgcgcggctccgaatcttc
ggcgtcaccgcggggggcaacagcgtgtgcgtccacgtgcacggcttcgagccttacttt
tacgctaaggttcccgacgcgttcaaagacgagatgtgcgagccctttcgcgtctccctg
aacggcgccatggcggctaaccagcgcggcgggaaccagcggggcaacgggacgttcatc
ggctccgtcgagatcgtccgcgataagcagtcgctgatgtacttccaggagggaaagacg
agcaccttcgtcaaggtgaccacgaccttgcccaacatggtggccacggcgcgagggatc
atcgagaagcagggagtgaccgtgcccggtctgcaccacacctcgctcacgttccagacg
ttcgagtcgaacgtgctgtacaccctgcgattcatggtggaccgcggcgtggtgggcggt
aactgggtcgagctgcccgcgggcggatacacgatccgcgagtcgcagaagcagagcatg
tgccagtacgagtgcgacgtcaaattcgacaaggtcgtctcgcacccccccgagggtcag
tactccaagctggcgccgttccgcatcctttccgtggacatcgagtgcgccggtcgcaag
ggtcacttccccgacgcggatcacgacccggtgatccagattgcgacgatggtgacgtgc
caaggggacgacaggcccatcatcaaggctatctggacgctggacacgtgcgcgccaatc
gtcggcgccgacgtgctgtccttcaaggacgagcgcgagctgcttcggtcgtggggtaag
ttcctgcgatccacggacccggatctgctcatcggatacaacatcgtgaactttgatttc
ccgtacctcatcaaccgagccgagcggctcaacgtcgaggatttcgcgtactggggccgc
atgatcggaagcaagctccgaatgaaggacaccaccttctcctcgaaggcctacggcacc
agggacagcaaggagatcaccatcgagggccgcgtgcagttcgacctcctccaggctgtg
cagagggaccacaagctgtcgtcgtactctctcaacgcggtgtcggcgcattttctcgga
gaacaaaaggaggacgtgcaccacagcgccatcagcgagctgcaggcgggcaccgcggag
acccgccggcgactcgcggtgtactgcctcaaggacgcctacctcccgcagaggctgctc
gataagttgatgtacatgtacaactacatcgagatggcgagggtcaccggcgtgcctctc
tcgttcctcctggctcgcggccagtccatcaaggtgctgtcgcagattctgcgcaaggcg
aagcagcgcgggcttctggtgccgcacatagccaagaaggggggcggcgagcaggcggac
ggcggcgtcgcgtacgagggagccaccgttctggacgcgaaagcgggttactacgagatg
cccgtggcgactctcgatttcgcttccctgtatccgtcgatcatgatggcgcataatctg
tgctacagcacgctggtgccgcgcgatagggtgcagtttatggcatccgaggacgttacc
aggaccccgtgcggcgatacgttcgtcaagagccacaaggagaaggggatcctacccgag
attttgacagagctcctctccgcgcgtaagcgagccaaggcggatctcaagaaggcgcag
gatccgctggagaaggctgtgctcgacggtcgacagctggcgctgaaggtgagcgccaac
tccgtgtacggcttcacgggcgccaccgtgggtcagctcccgtgcctcgagatttcctca
tccaccaccgcctttggccgcgagatgattgatcacaccaaggccatggtggaaaagagg
tacaccacggcgaacgggtacaaggccaacgcggacgtcatctacggagacaccgactcc
gtcatgatcaaatttaacgtcccggagctggaggatgcgatgaagcttggcgaggaggct
gcggagtacgtcagcgcgacgttcataaagccaatcaagctcgagttcgagaaggtgtac
ttcccgtacctgctcatcagcaagaagcgctacgcgggcctgctgtggaccaagacggag
aagtacgactacatggacaccaagggcatcgagaccgtgaggcgcgataactgtttgatg
gtgcgacaggttatcgagacctgcctggagaagattctcatccaccgcaaccccaagggt
gccatttcgtacgtcaagaacacgatatccgacttgctcatgaacaagctggacatgtcg
ctgctggtgatcaccaagtcattgtcgcaggcgcccgagaactacgcggtcaacgcccca
cacgtcgagctcgccaagaagatggccgttcgcgatccggtcaccgcgcccgtagtcgga
gaccgcgtggcttacgtcatgatcaagggacccaaaaacgcgaaatcctatgagaaatcc
gaggatcccatctacgcgatggacaacaacatcccgatcgattcgcaccactacctcgag
cacttcctcgccaagccgctgctgcgcatcttcgagcccatcatgggtgcggagaaggcg
gagagcgagttgctcaagggtgaccacacgaggaccatcgcggtgccgacgccgacggcc
aaggctggcggcatcatggccttcgccaaggttcgcttatcatgcgtggggtgcaggagc
agcatcaccgacgagaagcagagcaccgcgctgtgcacgcactgccttggcaaggaaccc
gagcacctgcagaaggcgctcaacagcgttaacgcgctggagcgggactttaaccggctg
tggacacagtgccagcggtgccaagggtcgctgcaccaggacgtgttgtgcacgagcagg
gactgccccatcttctacaggcggaagaaggtgcagaaggaccttatggatgcggagaac
acgctcaagaggttcgactggtaa
DBGET
integrated database retrieval system
