Methylomagnum ishizawai: MishRS11D_09230
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Entry
MishRS11D_09230 CDS
T07434
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
misz
Methylomagnum ishizawai
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
misz03016
]
MishRS11D_09230 (rnd)
Enzymes [BR:
misz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MishRS11D_09230 (rnd)
Transfer RNA biogenesis [BR:
misz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MishRS11D_09230 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
BBL73825
LinkDB
All DBs
Position
complement(1017762..1018925)
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AA seq
387 aa
AA seq
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MNAQPHTVFIDSTAHLREFCAALQDADWLAVDTEFLREKTYYPKFCLLQIACGPQVACID
PLAIDDLEPLAALLFDPAITKVFHAGRQDLEIFYQIWNKLPAPIFDTQIAAPLVGLAEQI
SYAGLVAEILGVSLGKSHTRTDWSLRPLSEAQLRYAADDVIYLGAAYQALRGKLEALGRL
DWLEDDFTALLNPELYESPPELAWQRIGGVQTLKSRQLSALRALAAWRETTAREQDIPRN
WVVRDEALLDLARLSPTTPEELKRIRGLEERTLKRYGNTLCKTILAGRDQPPPPLEWKAR
SARRPPEQEALLDLLSAVVRLRAAQHTLNPAILAGRKDLEQLLDEPQDSRLLKGWRKTMA
GEELAALLHGECHISVSDGLLHIQHYA
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcccagccccacaccgttttcatcgactccaccgcccatctgcgggaattctgc
gccgccctgcaagatgccgactggctggccgtggataccgaattcctgcgcgaaaagacc
tattaccccaaattctgcctattgcagatcgcctgcggcccgcaggtggcctgcatcgat
cccctggccatcgacgacttggaaccgctcgccgccctcttgttcgaccccgccatcacc
aaggtcttccacgccggacggcaggacttggaaatcttctaccagatatggaacaaacta
cccgcccccattttcgacacccaaatcgccgcgcccctggtcggcctggccgagcaaatc
agctacgcggggttggtggccgaaatcctcggcgtttccttgggcaagagccacacccgc
accgattggtccttgcggcccttgtcggaagcgcagttgcgctacgcggcggacgatgtg
atttatctgggcgcggcctatcaagcgctgcggggaaaactggaagccctgggacggctg
gattggttggaagacgatttcacggcgctgctgaacccggaactctacgaaagtccgccc
gagttggcctggcaacgcatcggcggggtgcagaccctgaaaagccgccaactttccgcg
ttgcgggccttggcggcttggcgcgaaaccaccgcccgcgaacaggatattccccgtaac
tgggtggtccgcgacgaggcgctgctcgacctggcccggctctcgcccaccacgccggaa
gaactcaagcgcatccggggcctggaggaacgcaccctcaagcgctacggcaacaccctg
tgcaaaaccatcctggccggacgcgaccagcccccgcccccactggaatggaaagcccgt
tccgcccgccgcccgcccgaacaggaagccttgctggacctgctgagcgcggtggtccgg
ctacgcgccgcgcagcacacgctgaatcccgccatcctggcgggccgcaaggatttggag
caactcctggacgagccccaggattcccggctgctgaagggctggcgcaaaaccatggcc
ggggaggaattggccgccctgctccacggggaatgccacatcagcgtcagcgacggcctg
ctccacatccagcactatgcctga
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